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SCNpilot_expt_1000_bf_scaffold_8750_curated_10

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 11241..11774

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator, LysR family similarity KEGG
DB: KEGG
  • Identity: 87.6
  • Coverage: 177.0
  • Bit_score: 319
  • Evalue 6.90e-85
  • rbh
Transcriptional regulator, LysR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSA8_RHITR similarity UNIREF
DB: UNIREF100
  • Identity: 87.6
  • Coverage: 177.0
  • Bit_score: 319
  • Evalue 2.20e-84
  • rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGB74102.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.6
  • Coverage: 177.0
  • Bit_score: 319
  • Evalue 3.10e-84

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Taxonomy

Rhizobium tropici → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 534
GTGGACGTCGCCTTCAAGCTCGGCGTGCTGGAGGACTCGAACCTGCGCATGCGCGGCATCCTCAAATGCGAGCGCGTGCTCTGCGCCTCGCCCGCCTATCTCGCGCGCCGCGGCATGCCCGCGAATGCAGACGCGCTGATCGCCGACAGGCACGACTGTCTCCTGCTGCGCTATCCCGGCTCGAAGGAATACTACTGGACGCTGGTGATGCCCGAGGGCCCGCGCAAGTTCGAGGTCGCCGGCCCCTATGACAGCGACGACGGCGACGTGCTCACCCAATGGGCGCTGGAGGACCGCGGCATCATCAACAAGCCGCGCTTCGAGGTGAACAGCCACCTGAAGGACGGCCGGCTTGTCGAGATCCTGAAGGACAGCCCGCCCGCCTCCGTGCAGCTCGCCGCGATCTATCCCCACAAGCGCTTCCAGGACCCGAAGGTCCGCCTGATGATCGATTTCATGGCTGAGCGTTGTCAGCGGCTGATCGGCAGGCTGCTCGACGAGGAGCCGGCGGCGTTCGAGGAAGCTACCGGCTGA
PROTEIN sequence
Length: 178
VDVAFKLGVLEDSNLRMRGILKCERVLCASPAYLARRGMPANADALIADRHDCLLLRYPGSKEYYWTLVMPEGPRKFEVAGPYDSDDGDVLTQWALEDRGIINKPRFEVNSHLKDGRLVEILKDSPPASVQLAAIYPHKRFQDPKVRLMIDFMAERCQRLIGRLLDEEPAAFEEATG*