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SCNpilot_expt_1000_bf_scaffold_11045_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(2417..3187)

Top 3 Functional Annotations

Value Algorithm Source
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.6
  • Coverage: 254.0
  • Bit_score: 463
  • Evalue 1.90e-127
Triosephosphate isomerase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5PJY9_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 82.8
  • Coverage: 256.0
  • Bit_score: 436
  • Evalue 1.40e-119
  • rbh
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] similarity KEGG
DB: KEGG
  • Identity: 82.4
  • Coverage: 256.0
  • Bit_score: 435
  • Evalue 9.50e-120
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 771
ATGAGCCAAGGCCGGAAGTTCTGGGTCGGCACGAGCTGGAAGATGAACAAGACGCTCGCCGAGGCGAAGTCCTTCGCCGAGGGCCTGAAGGCGGCGGATGGCGATGCCGACGCCCGCATCCAGCGCTTCGTCATCCCGCCCTTTACCGCCGTGCGCGAGGTCAAGGCCATGCTTGCCGGCACCTCCGTCAAGGTCGGCGCCCAGAACATGCATTGGGCCGACGAAGGCGCCTGGACGGGCGAGGTCTCGCCCGTGATGCTGAAGGACTGCAATCTCGACCTCGTCGAACTCGGCCATTCCGAACGCCGCGAGCATTTCGGCGAGACGGACGAGACGGTCGGCCTCAAGACGGAGGCGGCGGTGCGCCACGGGCTCGTGCCGCTCATCTGCATCGGCGAAACGCTCGCCGATCGCGAAAGCGGCCGGGCGGCGGAGGTGCTGGCACAGCAGGTGCGCAGCGCCCTCGGCAAGCTCGACGGCGCGCAGAAGGAGGCGGAGATCCTGCTGGCCTATGAGCCCGTATGGGCCATCGGCGAGAAGGGCATCCCGGCAAGCGCGGACTATGCGAACGCGCGCCACGCCGAGATCGCCAAGGTGGCGCAGGACATTCTCGGCCGCCGCATTCCCTGCCTCTACGGCGGTTCGGTCAACCCGCAGAACTGCGCGGAACTGATCGCCTGCCCCGACATCGACGGGCTCTTCATCGGCCGCTCAGCCTGGAAGGTTGAAGGCTATCTCGACATCTTGGCGCGCGCAGCCGCCACCATCTGA
PROTEIN sequence
Length: 257
MSQGRKFWVGTSWKMNKTLAEAKSFAEGLKAADGDADARIQRFVIPPFTAVREVKAMLAGTSVKVGAQNMHWADEGAWTGEVSPVMLKDCNLDLVELGHSERREHFGETDETVGLKTEAAVRHGLVPLICIGETLADRESGRAAEVLAQQVRSALGKLDGAQKEAEILLAYEPVWAIGEKGIPASADYANARHAEIAKVAQDILGRRIPCLYGGSVNPQNCAELIACPDIDGLFIGRSAWKVEGYLDILARAAATI*