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SCNpilot_expt_1000_bf_scaffold_8631_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 5841..6101

Top 3 Functional Annotations

Value Algorithm Source
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 similarity KEGG
DB: KEGG
  • Identity: 84.9
  • Coverage: 86.0
  • Bit_score: 148
  • Evalue 1.00e-33
30S ribosomal protein S20 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z505_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 84.9
  • Coverage: 86.0
  • Bit_score: 148
  • Evalue 3.30e-33
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.9
  • Coverage: 86.0
  • Bit_score: 148
  • Evalue 4.60e-33

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Taxonomy

Novosphingobium nitrogenifigens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 261
ATGGCCAATACGCCGCAAGCCCGCAAGCGCATCCGCCGCAACGACAAGCGCGCCGAGATCAACGGTGCGCGCATGAGCCGCATCCGCAGCTTCGTGAAGAAGGTCGAAGTCGCGATCGCCGGCGGGGACAAGACCGCCGCTGCCGACGCGCTCAAGGCCGCCCAGCCGGAAATGGCGCGCGGCGTTTCGCGCGGCGTGCTCCACAAGAACACCGTCGCGCGCAAGATGTCGCGCCTGTCGAAGCGAATCGCGGCGCTCTGA
PROTEIN sequence
Length: 87
MANTPQARKRIRRNDKRAEINGARMSRIRSFVKKVEVAIAGGDKTAAADALKAAQPEMARGVSRGVLHKNTVARKMSRLSKRIAAL*