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scnpilot_solids1_trim150_scaffold_757_curated_7

Organism: solids_Actinobacteria_1

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 ASCG 13 / 38
Location: comp(8594..9553)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma 70 n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B47A7B similarity UNIREF
DB: UNIREF100
  • Identity: 54.2
  • Coverage: 295.0
  • Bit_score: 296
  • Evalue 3.60e-77
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EXG80988.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.4
  • Coverage: 305.0
  • Bit_score: 287
  • Evalue 1.80e-74
RNA polymerase sigma factor rpoD similarity KEGG
DB: KEGG
  • Identity: 55.2
  • Coverage: 268.0
  • Bit_score: 281
  • Evalue 3.70e-73

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Taxonomy

Cryptosporangium arvum → Cryptosporangium → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 960
ATGTCCGCCGCCGCCACGATGCTGCCCGCACCGACCGCCACCACGGGCGTCGAAGAACTCGTCCGCACCCATCTGCCGCTCGTCGGCCATCTCGTGCGGGAACTCGCCGGGCGGCTTCCGGCCCACGTCAACCGCGACGACCTCGCGAGCGCCGGCATGATGGCCCTGGTCACCAGCGCCCAAGGTTTCGACGATTCACGCGGCGTGCCGTTCGCGCGCTTCGCCACGATCCGAATCCGCGGGGCGCTGACCGACGAACTCCGCTCGATGGATTGGGCCTCCCGCGGAGTGCGCAGCAGGGCGCGCGAGGTCGACGCCGCCAAGAGCGAATTGACAGCGGCGCTCGGCCGCACGCCCCGCCGCGAGGAGATCGCTCAGGCCATGGGCGTCGCGGTGGGCGAGCTCGACACCCTGGACGCCGACGTGCACCGTGCCGCCACGCTGAGCGTCGAAGGCCTCACCGAGACCGCCGGCGGCGACCTGATCCCCAGCGGCGACGCCGGACCCGAGGGCTTGCTGATCCACCGCGAGCAGATCGGCCTGCTGCACGACGCCATCGCCGAGTTGCCGGACCGGCTGCGGATCGTCATCGAGGCCTACTTCTACGGCAATCAGCGGATGGCCGACATCGCGGCCGACCTGGGCGTCACCGAATCCCGGATCTCGCAGCTGCGCACCGAGGCGCTGGCCCTGCTGCGCGACGGGCTGAACGGCCAGCACGCATCGCATGGTGCGGCGACCGGGATTCCGGCGCAGCGGCGCGGCTCGGCGGTCGCGTCTCTGGTGGACAAGACGGCGCCGGAGAAGGCCGCGAAGCGCCCGTCCCGTCGCGAGGCCGCGCGACAGGCCTACATCGCCGCCATCGCATCCCGCTCCACCCTGGCCGGCCGACTGGCCGCCACCACGACGCTGGGCGACACCCGCGCCGAATCCCTGGAGGCGCTGCGCGCAGCGCAGTAG
PROTEIN sequence
Length: 320
MSAAATMLPAPTATTGVEELVRTHLPLVGHLVRELAGRLPAHVNRDDLASAGMMALVTSAQGFDDSRGVPFARFATIRIRGALTDELRSMDWASRGVRSRAREVDAAKSELTAALGRTPRREEIAQAMGVAVGELDTLDADVHRAATLSVEGLTETAGGDLIPSGDAGPEGLLIHREQIGLLHDAIAELPDRLRIVIEAYFYGNQRMADIAADLGVTESRISQLRTEALALLRDGLNGQHASHGAATGIPAQRRGSAVASLVDKTAPEKAAKRPSRREAARQAYIAAIASRSTLAGRLAATTTLGDTRAESLEALRAAQ*