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scnpilot_solids1_trim150_scaffold_34780_curated_2

Organism: solids_Burkholderiales_3

partial RP 13 / 55 BSCG 18 / 51 ASCG 5 / 38
Location: comp(560..1165)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031F04A8 similarity UNIREF
DB: UNIREF100
  • Identity: 67.2
  • Coverage: 192.0
  • Bit_score: 260
  • Evalue 1.40e-66
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 68.5
  • Coverage: 197.0
  • Bit_score: 256
  • Evalue 6.20e-66
Putative ECF-family RNA polymerase sigma factor {ECO:0000313|EMBL:CAE37684.1}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.5
  • Coverage: 197.0
  • Bit_score: 256
  • Evalue 2.80e-65

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Taxonomy

Bordetella parapertussis → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 606
ATGCGTCGACACAACCAGCTGCTGTTTCGCACGGCGCGCTCCATCCTCAAGAGCGATCCCGAGGCCGAGGAAGCGGTGCAGGAGGCGTATCTGCAGGCCTGGCGCGCGCTGGCGACGTTTCGGGCCGACGCCAGGCTCTCCACCTGGCTCGTTCGCATCGTGGCCAACGAGGCGCTGGGGCGCCTTCGACGCAAGCACGGCGAGGTCATTCCCCTGGATGCGGCCATGCTGATCCCGGACCCCGACGTGCAGGCCCGTTTCACGGCCGACCCCAGCCAGCAACCCGAAGGAAAAGCCATGCGTGACGAACTTCGCAAAATTCTGGAAGAACGCATCGATGGCCTGCCCGACATCTACCGCACGGTTTTCGTGCTGCGCGCGGTGCAGGAACTGAGCGTGGAAGAAGTGGCGCACGCGCTGCAGATCCCCGAGCCCACGGTGCGCACGCGCTTTTTCCGCGCGCGCAGCCTGTTGCGCGAGGGGCTGGCGAGCGACATCGACGGCACCATGGGCCACGCGTTTTCCTTCGATGGCGAACGGTGCGACCGCCTCGTGGAGCACACGCTACGGCGCGCCACGCACGAAGGGCTGATCAACGCGGCCTGA
PROTEIN sequence
Length: 202
MRRHNQLLFRTARSILKSDPEAEEAVQEAYLQAWRALATFRADARLSTWLVRIVANEALGRLRRKHGEVIPLDAAMLIPDPDVQARFTADPSQQPEGKAMRDELRKILEERIDGLPDIYRTVFVLRAVQELSVEEVAHALQIPEPTVRTRFFRARSLLREGLASDIDGTMGHAFSFDGERCDRLVEHTLRRATHEGLINAA*