ggKbase | organisms

Consensus taxonomy: Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_15

Properties

Avg. coverage: 1.00 Longest contig: 69.43 Kbp Bin length: 1.40 Mbp GC content: 65.94 %

Contigs count: 575 Features count: 1744 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 18 / 51 ASCG 5 / 38

Displaying items 1-50 of 575 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_41880_curated Species: Acidovorax sp. MR-S7 (50%)	2	999 bp	71.37	1.00	103.30
scnpilot_solids1_trim150_scaffold_29261_curated Species: Acidovorax sp. JS42 (50%)	2	1326 bp	72.40	1.00	102.72
scnpilot_solids1_trim150_scaffold_29234_curated Species: Alicycliphilus denitrificans (50%)	2	1297 bp	67.08	1.00	102.70
scnpilot_solids1_trim150_scaffold_35434_curated Species: Burkholderia sp. MSh2 (50%)	2	1153 bp	64.70	1.00	102.52
scnpilot_solids1_trim150_scaffold_22404_curated Order: Burkholderiales (100%)	3	1555 bp	68.30	1.00	102.25
scnpilot_solids1_trim150_scaffold_26656_curated Species: Massilia sp. LC238 (50%)	2	1321 bp	58.36	1.00	101.51
scnpilot_solids1_trim150_scaffold_25006_curated Species: BJP_08E140C01_Burkholderiales_65_30 (50%)	2	1475 bp	73.76	1.00	101.29
scnpilot_solids1_trim150_scaffold_8772_curated Species: Acidovorax sp. MR-S7 (66.67%)	3	3123 bp	66.41	1.00	100.87
scnpilot_solids1_trim150_scaffold_35025_curated Species: Acidovorax avenae (50%)	2	1170 bp	67.61	1.00	100.77
scnpilot_solids1_trim150_scaffold_8879_curated Species: RLO_Burkholderiales_65_40 (50%)	2	3128 bp	68.16	1.00	100.70
scnpilot_solids1_trim150_scaffold_27373_curated Species: Acidovorax sp. JS42 (100%)	2	1331 bp	69.95	1.00	100.53
scnpilot_solids1_trim150_scaffold_23796_curated	3	1340 bp	74.10	1.00	100.52
scnpilot_solids1_trim150_scaffold_22006_curated Species: Alicycliphilus denitrificans (50%)	4	2711 bp	71.27	1.00	100.48
scnpilot_solids1_trim150_scaffold_33999_curated Species: Acidovorax sp. MR-S7 (100%)	2	1165 bp	74.25	1.00	100.43
scnpilot_solids1_trim150_scaffold_18310_curated Genus: Alicycliphilus (66.67%)	3	1775 bp	70.42	1.00	100.39
scnpilot_solids1_trim150_scaffold_37952_curated Species: GWE1_Burkholderiales_65_30_curated (100%)	2	1034 bp	75.24	1.00	100.39
scnpilot_solids1_trim150_scaffold_22908_curated Species: Alicycliphilus denitrificans (50%)	2	1578 bp	69.14	1.00	100.38
scnpilot_solids1_trim150_scaffold_31689_curated Species: Alicycliphilus sp. B1 (100%)	2	1262 bp	69.10	1.00	100.32
scnpilot_solids1_trim150_scaffold_50908_curated Species: Acidovorax sp. NO-1 (100%)	2	1391 bp	69.59	1.00	100.29
scnpilot_solids1_trim150_scaffold_39169_curated Species: Burkholderiaceae bacterium 26 (50%)	2	1074 bp	68.72	1.00	100.28
scnpilot_solids1_trim150_scaffold_24706_curated Species: Alicycliphilus denitrificans (66.67%)	3	1460 bp	63.70	1.00	100.27
scnpilot_solids1_trim150_scaffold_9521_curated Species: Comamonas testosteroni (66.67%)	3	2986 bp	71.43	1.00	100.27
scnpilot_solids1_trim150_scaffold_23256_curated Species: Acidovorax sp. JS42 (50%)	2	1508 bp	64.32	1.00	100.27
scnpilot_solids1_trim150_scaffold_17596_curated Species: Herbaspirillum sp. TSA66 (100%)	3	1906 bp	69.99	1.00	100.26
scnpilot_solids1_trim150_scaffold_8643_curated Species: Alicycliphilus denitrificans (50%)	4	3187 bp	73.58	1.00	100.25
scnpilot_solids1_trim150_scaffold_31566_curated Species: RLO_Burkholderiales_65_40 (50%)	2	1200 bp	71.08	1.00	100.25
scnpilot_solids1_trim150_scaffold_25883_curated Species: Verminephrobacter eiseniae (66.67%)	3	1395 bp	70.97	1.00	100.22
scnpilot_solids1_trim150_scaffold_12597_curated Order: Burkholderiales (100%)	3	2437 bp	73.57	1.00	100.21
scnpilot_solids1_trim150_scaffold_42469_curated Species: Acidovorax ebreus (50%)	2	1015 bp	70.15	1.00	100.20
scnpilot_solids1_trim150_scaffold_41227_curated Species: Acidovorax avenae (50%)	2	1024 bp	66.99	1.00	100.20
scnpilot_solids1_trim150_scaffold_38192_curated Species: Alicycliphilus denitrificans (66.67%)	3	1087 bp	72.49	1.00	100.18
scnpilot_solids1_trim150_scaffold_32277_curated Species: RLO_Burkholderiales_65_40 (50%)	2	1222 bp	70.70	1.00	100.16
scnpilot_solids1_trim150_scaffold_31374_curated Species: BJP_08E140C01_10KDA_Burkholderiales_65_51 (50%)	2	1225 bp	73.47	1.00	100.16
scnpilot_solids1_trim150_scaffold_28486_curated Species: Achromobacter sp. RTa (50%)	2	1303 bp	69.38	1.00	100.15
scnpilot_solids1_trim150_scaffold_27687_curated Species: Acidovorax sp. MR-S7 (50%)	2	1345 bp	68.48	1.00	100.15
scnpilot_solids1_trim150_scaffold_19306_curated Species: Acidovorax ebreus (50%)	2	1783 bp	69.43	1.00	100.11
scnpilot_solids1_trim150_scaffold_41647_curated Species: Alicycliphilus denitrificans (50%)	2	1028 bp	68.58	1.00	100.10
scnpilot_solids1_trim150_scaffold_41330_curated Species: Alicycliphilus denitrificans (100%)	1	996 bp	63.96	1.00	100.00
scnpilot_solids1_trim150_scaffold_10666_curated Species: Acidovorax sp. MR-S7 (50%)	4	2721 bp	67.92	1.00	100.00
scnpilot_solids1_trim150_scaffold_24744_curated Species: Acidovorax temperans (100%)	2	1482 bp	70.11	1.00	100.00
scnpilot_solids1_trim150_scaffold_18002_curated Species: Acidovorax sp. MR-S7 (100%)	1	1842 bp	66.29	1.00	100.00
scnpilot_solids1_trim150_scaffold_10650_curated Species: Alicycliphilus denitrificans (100%)	1	2742 bp	66.92	1.00	100.00
scnpilot_solids1_trim150_scaffold_38720_curated Species: Acidovorax sp. JS42 (50%)	2	1077 bp	70.38	1.00	100.00
scnpilot_solids1_trim150_scaffold_16786_curated Species: R_Curvibacter_63_18 (100%)	1	1947 bp	66.10	1.00	100.00
scnpilot_solids1_trim150_scaffold_28273_curated Species: Massilia sp. LC238 (50%)	2	1311 bp	63.62	1.00	100.00
scnpilot_solids1_trim150_scaffold_23902_curated Species: Acidovorax delafieldii (100%)	1	1503 bp	58.15	1.00	100.00
scnpilot_solids1_trim150_scaffold_15824_curated Species: Acidovorax sp. MR-S7 (100%)	1	2034 bp	72.42	1.00	100.00
scnpilot_solids1_trim150_scaffold_19580_curated Order: Burkholderiales (66.67%)	3	1779 bp	63.41	1.00	100.00
scnpilot_solids1_trim150_scaffold_13296_curated Species: Alicycliphilus denitrificans (100%)	1	2320 bp	70.00	1.00	99.96
scnpilot_solids1_trim150_scaffold_16673_curated Species: Pandoraea pnomenusa (50%)	2	1987 bp	61.25	1.00	99.95

Displaying items 1-50 of 575 in total

solids_Burkholderiales_3

SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Burkholderiales_3

SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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