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scnpilot_solids1_trim150_scaffold_1_curated_12

Organism: solids_Castellaniella_1

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: 9616..10938

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.8
  • Coverage: 440.0
  • Bit_score: 824
  • Evalue 9.50e-236
rumA; 23S rRNA 5-methyluridine methyltransferase (EC:2.1.1.-); K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] similarity KEGG
DB: KEGG
  • Identity: 70.1
  • Coverage: 431.0
  • Bit_score: 629
  • Evalue 5.90e-178
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9INY8_BORPD similarity UNIREF
DB: UNIREF100
  • Identity: 70.1
  • Coverage: 431.0
  • Bit_score: 629
  • Evalue 1.90e-177

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Taxonomy

Castellaniella defragrans → Castellaniella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1323
ATGCCTGAACCCATTGTGTACCCCCTGGATATCGAATCGCTGGATCTCGAGGGGCAGGGGATCGCCCATCACGAAGGCAAAGTCGTCTTCGTGGAGGGCGCCCTGCCCGGAGAACAGGTTCTGGCCCGCGTGACGCGGCGCAAGCCCTCCTACGACAAGGCCAAGGTCGAACGCGTCCTGCGGCCGTCCTCGCAGCGCACCCGGCCGCCGTGCCCGCATTTCGGCGTCTGCGGGGGCTGCGCCATGCAGCACCTGGAGCCCGCCGCGCAGATGGCCGTCAAGCAGCGCTCGCTGGAAGACGCGCTGGAGCATATCGGCAAGGTCCGTCCGCGGCAGATTCTGCCGGCGCTGCAGGGGCCGACCTTCGGCTACCGCCATCGCGCCCGCCTGTCCGTGCGGCTGGTGCAGAAGAAAGGCGGCGTGCTGGTCGGATTCCGCGAACGCGCCAGCAGCTACGTGGCCGACATGCAGTCCTGCCTGGTGCTGCCGCCGCATGTGTCGGCCTTGCTGATGCCTCTGCGCGAACTGATCGGCGGCCTGTCGCGGCCCGAGCGCATGCCGCAGATCGAAGTGGCGGTGGGCGACGAATCCACCGTCTTCTGCCTGCGGCATCTGGAACCGCTGACGCCGGCCGACCTGGATCGCCTGCGCGAGTTCGGCGCGCGGCACGGCATCGACTGGTGGCTGCAGCCCAAGGGGCCGGAAACGGCCCATCCCCTGGACCCGGCGCGAGCCGATGCGCTGGCCTATGCGCTGCCGGCGTACGGCCTGCGCATGCATTACAAGCCCGCCGATTTCACCCAGGTCAATCCGCACATCAACCAGGTGCTGGTGGCGCGGGCGCTGGACCTGCTGGAGATCCAGCCGGACGACCGCGTGGCGGACCTGTTCTGCGGCCTGGGCAATTTCAGCCTGCCGCTGGCCACGCGCAGTCGCGCGGTCGTGGGCATCGAGGGCAGCGCCACGCTGGTGGCCCGCGCCCGCGAGGACGCCGTTCGCCAGGGGCTGGCGGACAAGGCCGAATTCGCCGAATTGAATCTGTTCGAGGTCGATGCCGGCTGGCTGCGCGGCCTGGGCCATTTCGACCGCATGCTGATCGATCCCCCGCGCGAAGGCGCGCTGGCCGTGGCGCAGGCCCTGGCCGACCTGGCGCCGGAAGAACGTCCGCGCCGCGTCGTATACGTCTCCTGTAACCCCGCAACCCTGGCTCGCGATGCCGGGATGCTGTGCCATGTGGGCGGGTGGACGCTGAAGGCCGCGGGCGCGGTCAACATGTTCCCCCACACGGCGCACGTGGAGTCGATCGCGGTATTCGAACCCTGA
PROTEIN sequence
Length: 441
MPEPIVYPLDIESLDLEGQGIAHHEGKVVFVEGALPGEQVLARVTRRKPSYDKAKVERVLRPSSQRTRPPCPHFGVCGGCAMQHLEPAAQMAVKQRSLEDALEHIGKVRPRQILPALQGPTFGYRHRARLSVRLVQKKGGVLVGFRERASSYVADMQSCLVLPPHVSALLMPLRELIGGLSRPERMPQIEVAVGDESTVFCLRHLEPLTPADLDRLREFGARHGIDWWLQPKGPETAHPLDPARADALAYALPAYGLRMHYKPADFTQVNPHINQVLVARALDLLEIQPDDRVADLFCGLGNFSLPLATRSRAVVGIEGSATLVARAREDAVRQGLADKAEFAELNLFEVDAGWLRGLGHFDRMLIDPPREGALAVAQALADLAPEERPRRVVYVSCNPATLARDAGMLCHVGGWTLKAAGAVNMFPHTAHVESIAVFEP*