ggKbase home page

scnpilot_solids1_trim150_scaffold_2927_curated_6

Organism: solids_Gemmatimonadetes_1

near complete RP 47 / 55 BSCG 47 / 51 MC: 2 ASCG 13 / 38
Location: comp(6394..6744)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA74_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 45.0
  • Coverage: 109.0
  • Bit_score: 79
  • Evalue 1.90e-12
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG92078.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.9
  • Coverage: 93.0
  • Bit_score: 129
  • Evalue 2.30e-27
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 45.0
  • Coverage: 109.0
  • Bit_score: 79
  • Evalue 6.10e-13

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Gemmatimonadetes bacterium KBS708 → Gemmatimonadetes → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 351
ATGACCTTCACCGCCTCGTGCCGACGGGTCCTGGATGAGGAAGCAGGCGTCCCCGCCCACGGCAGCCGGCGGGGGCGGCGGGAGCGGACGTTCGTCCACGACCCGGTGGCCATCGGCAACGCGAGCGAGGATCATCCCGCCGAGCGCGGGGCGTGGCGCGAGGAGATCGAGCACGCCCTGAACCGGCTGGATGGACGACAGCGGGAGGCATTCCTCCTCAAGCATGTCGAGGAGCTGAACTACGACGAGATGGCGGAACTTACTGGTGTGGGAGTTTCCGCCCTCAAGATGCGCGTGAAGCGAGCGTGTGAACGGTTGCGCGAGATGCTTCGGGAGGTGGAGCACGTATGA
PROTEIN sequence
Length: 117
MTFTASCRRVLDEEAGVPAHGSRRGRRERTFVHDPVAIGNASEDHPAERGAWREEIEHALNRLDGRQREAFLLKHVEELNYDEMAELTGVGVSALKMRVKRACERLREMLREVEHV*