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scnpilot_solids1_trim150_scaffold_2157_curated_4

Organism: solids_Gemmatimonadetes_1

near complete RP 47 / 55 BSCG 47 / 51 MC: 2 ASCG 13 / 38
Location: 3816..4454

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN0_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 80.5
  • Coverage: 195.0
  • Bit_score: 319
  • Evalue 3.40e-84
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.9
  • Coverage: 211.0
  • Bit_score: 353
  • Evalue 2.30e-94
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 80.5
  • Coverage: 195.0
  • Bit_score: 319
  • Evalue 1.10e-84

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Taxonomy

Gemmatimonadetes bacterium KBS708 → Gemmatimonadetes → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 639
ATGGCAGACATCGCACTCAAGAAATCGGCAAATCCTGCCGGCAGCCCGGTCAGGGAGCAGCTCCGCGCACTGGACGATGCGGCGGTGGTTACCGCCTTCCTGGAAGGAGAGGAGCGTGCGTTCCAGGAACTCGTGGATCGCTATCAGACGCGCCTGCTCAACTTCATCTACCGCACGATTGGCGATCGGGAGAAGGGCGAGGATCTCGTTCAGGAGGTCTTCATCCGCGTCTACCGTCACCTGCATCGTTTCGACCGATCCAAGAAGTTCTCGACATGGATCTACACGATCGCCTCGAATCTGGCCAAGAACGAGCTCCGCAACCGTTCGCGGAACCCGCTCGTCCTCTTCCAGACGATTCGCAAGAACTGGGCAGACGACGATCGACCGCTGCAGTTCGAGGACTCCAGCATGCGGCCGGACGATCTCTTCCGGAAGCGCCATCTGCGTGAACTGGTAGAGTCGTCGGTCGCCCAGCTTCCCGAGCATCATCGCGAGGTCTTCGTCCTCCGTGAGATAGAGGGAAAGTCCTATGAGGAGATTGCCGAGATCACCGATACCAACCTTGGCACGGTGAAATCGCGACTCAATCGCGCCCGCAGTTCCTTCGCCGAGATCATAGCGCCGGCGCTGGACTGA
PROTEIN sequence
Length: 213
MADIALKKSANPAGSPVREQLRALDDAAVVTAFLEGEERAFQELVDRYQTRLLNFIYRTIGDREKGEDLVQEVFIRVYRHLHRFDRSKKFSTWIYTIASNLAKNELRNRSRNPLVLFQTIRKNWADDDRPLQFEDSSMRPDDLFRKRHLRELVESSVAQLPEHHREVFVLREIEGKSYEEIAEITDTNLGTVKSRLNRARSSFAEIIAPALD*