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scnpilot_solids1_trim150_scaffold_361_curated_3

Organism: solids_Rhodanobacter_5

partial RP 37 / 55 MC: 2 BSCG 37 / 51 MC: 2 ASCG 10 / 38
Location: comp(2984..6469)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.8
  • Coverage: 999.99
  • Bit_score: 2237
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W615_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 96.8
  • Coverage: 999.99
  • Bit_score: 2237
  • Evalue 0.0
transcription-repair coupling factor Mfd similarity KEGG
DB: KEGG
  • Identity: 91.7
  • Coverage: 999.99
  • Bit_score: 2121
  • Evalue 0.0

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3486
ATGACCAGCCCGATCAAGCACCCGCCCCTGCCGACCACCCCGAAGCAACGCCGCTACTGGACGCCGCCCCATGGCTCCGGCCGGGCCTTGCTGATTGCCGAGGCGGCGCGTTCGCACGAAGGCCTGCTGGTGGCGGTGACCCGCGATACCCAACGCGCCCAGGCGCTCGAATCGGAGCTGAAGATCTTCGCCGGCGGTCTGCCGGTGCTGCATTTCCCGGACTGGGAAACGCTGCCCTACGACGTGTTCAGCCCGCACCCGGAAATCGTCTCGCAGCGCATCGCCACCTTGTACCGGTTGCCCGGCGTGAAACGCGGCGTGCTGGTGGTGCCGATCGCCACGCTGATGCAGCGGATCGCGCCGCGCGCGCACATCACCGGTTCCGGACTGGTGCTGTCCAGGGGCCAGAAGTTCGACCTGGCCGCAGAACAGCGCCGGCTTGAGGCCTCCGGTTACCGTCACGTGCCCCAGGTGGCCGAGCCCGGTGACTTCGCCGTGCGCGGCGCCCTGCTCGACGTTTTCCCGATGGGCACGGCCGAGCCGTATCGCATCGAGCTGTTCGACGATGAGGTGGATTCGATCCGCAGCTTCGATCCGGAAACCCAGCGCTCGCAGCAGCAGGTGGACAAGGTCGAGCTGCTGCCGGCACGCGAGTTTCCGCTGACCGACGAAGCGGCGAAGGAATTCCGGGGCAACCTGCGCGAACGTTTCCCGATCGACGTGCGCCGCTGCCCGCTGTACCAGGACATGAAGGAAGGCGTCACGCCCGGCGGCATCGAGTACTACCTGCCACTCTTCTTCAAACAAACCGCCACGCTGTTCGACTACCTCGCCGACGACGCGCTGTTCGTGCTGGGCGAAGGCGCCGGCGAAGCGGCCGAGCAGTTCTGGACGCAGACCGCCGAACGCTACGACCAGCGCGCGCACGACATCGAGCGCCCGGTGCTGCCGCCGGCCGAGCTCTACCTGCCGCCGGAGAAACTGCGCGAACAGCTCAACAAGCGGCTGCGGGTGGAAGTGGTCGAAGCCGGCCACGAGCACGCGGTCGACACCGGCACCCAGCCGGCGCCGGAGCTGCCGCTCAATCGCAAGGGCGAGGAACCCGGCACGTCGCTGCGGCATTTCCTGTCCAGCTATCCCGGCCGCGTACTGATCGCGGCGGATTCGGCGGGGCGGCGCGAGGCGCTGATCGAGACGCTGGCCGCGGCGGGGTTGAAACCCGAAGTCATCGAGGACTGGAGCGTTTTTCTCCTCCCCCTGCGTGCAGGGGAGGGAGCCAAGCATGAGGGGCCGCGGTTCGCGATCACCATCGCGCCGCTGGAACAGGGCTTTGCGCTGACCAAACCCGCGCTCGCCGTGCTCACCGAGCGCGAGCTCTACGGCGAGCGGGTGCGCAGCGAGCGCGACCGCAAGCGCCGCCGCGGCACCGCGCGCGATCCGGAAAGCATCATCCGCGACCTCACCGAGCTCACCATCGGCGCGCCGATCGTGCACGTGGATCACGGCGTGGGCCGCTACCAGGGCCTGGCCTCGATGGATGTGGGCGGCATGGATGGCGAGTTCCTCACCATCGAATACGCCAAGGGCGACAAGCTCTACGTGCCGGTGGCACAGCTGGGCCTGGTCAGCCGCTACTCCGGCACCGCGCCGGAACTGGCGCCGCTGCATTCGCTGGGCGGCGATGCGTGGGAACGCGCGCGCCGGAAGGCCGCGGAAAAAGTGCGCGACGTGGCCGCCGAACTGCTGGCGATCTATGCCCAGCGCCAGGCCCGCGGCGGCGAGTCGATGCCGATCGACCGGCAGATGGTCGAACAGTTCGGCAGCACCTTTCCGTTCGAGGAAACCCCCGATCAGGAAACCGCGATCGAGGCCGTGCTGGAGGATCTGGCCGCGCCCCGCGCGATGGACCGGGTGATCTGCGGCGATGTGGGCTTCGGCAAGACCGAGGTGGCGCTGCGCGCCGCCTTTGCCACCGCCACCGCAGGCAAGCAGGTTGCCGTGCTGGTGCCGACCACCCTGCTCGCCCAGCAGCACTACCGCAACTTCGCCGACCGCTTCGCCGACTGGCCGGTACGGGTCGACGTGCTGTCGCGCTTCAAGTCGACCAAGGAAGTGAACGAGGCGCTGAAGCGTCTTGCCGACGGCCAGATCGACGTGATCGTGGGCACCCACAAGCTGCTGCAGCCCGACATCCGGTTCAAGAACCTGGGCCTGGTCATCGTCGACGAGGAACAGCGTTTCGGCGTGCGCCAGAAGGAACAGCTGAAGAAGCTGCGTGCCGAGGTCGACCTGCTGACGATGACCGCCACGCCGATCCCGCGCACCTTGAACATGGCGATGGCCGGCCTGCGCGATCTTTCATTGATCGCCACGCCGCCGGCGCATCGCAGCGCCGTGCGGACCTTCATCTCGGCGTGGGACCCGGCCACGATCCGCGAGGCGTTGCAGCGCGAGCTGTCGCGCGGCGGCCAGGTGTACTTCCTGCACAACGAGGTGCAGAGCATCGAGCGGATCGTGCGCGAACTGGAGGAGCTGGTGCCCGAGGCGCGCATCCGCATCGCCCACGGCCAGATGCCCGAGCGCGAACTGGAAGGCGTGATGGCGGATTTCCACCGCCAGCGCTTCAACGTGCTGGTGTGCACCACGATCATCGAAACCGGCATCGACATCCCCAGCGCCAACACCATCATCATCAATCGCGCCGACCACTTCGGCCTGGCCCAATTGCACCAGCTGCGCGGTCGCGTGGGCCGTTCACATCACCGCGCGTATGCATACCTGGTGGTGCCCGACCGCAAGTCGATCACCGCCGACGCGCAGAAGCGGCTGGAAGCACTCGCCTCGCTGGAGGAACTCGGCGCCGGCTTCACCCTGGCCACCCACGACCTGGAAATCCGCGGTGCCGGCGAACTGCTCGGAGACGAGCAGTCCGGCCAGATCCAGGAGATCGGCTTCGGCCTGTACACCGAGTTGCTCGACCGGGCGGTGCGCGCGCTGAAGTCCGGCAAGGTGCCGGATTTCGACCTGAGCTCCGAGCACGAGACCGAAGTCGAGCTGCACCTGCCCGCCTTGATCCCCGACGATTACCTGGGCGACGTGCACCACCGCCTGACCCTGTACAAGCGCATCGCCAGCGCCCGCAGCGAGGACGACCTGCGCGACCTGCAGGTCGAGATGATCGATCGCTTCGGCCTGCTGCCCGATGCCACCAAGCAATTGTTCGCGGTGGCCAGCCTGAAACTGATGGCCACCCCGCTGGGCATCCGCAAGCTGGACTTCGGCCCCAACGGCGGCCGCATCACCTTCCGCGAGAAACCCGAGATCGACCCGATGGCCATCATCAGGCTGATCCAGCAACTGCCCCGCGTTTACAAGCTGGACGGCCAGGACAAACTGAAGGTGATCCTCGACCTGCCCGGCGCCAGCGAGCGCATCCGCAGTGCCCAGGAAGTGCTGGTGCTGCTGGGCGCGCGCCGACCGGGCTGA
PROTEIN sequence
Length: 1162
MTSPIKHPPLPTTPKQRRYWTPPHGSGRALLIAEAARSHEGLLVAVTRDTQRAQALESELKIFAGGLPVLHFPDWETLPYDVFSPHPEIVSQRIATLYRLPGVKRGVLVVPIATLMQRIAPRAHITGSGLVLSRGQKFDLAAEQRRLEASGYRHVPQVAEPGDFAVRGALLDVFPMGTAEPYRIELFDDEVDSIRSFDPETQRSQQQVDKVELLPAREFPLTDEAAKEFRGNLRERFPIDVRRCPLYQDMKEGVTPGGIEYYLPLFFKQTATLFDYLADDALFVLGEGAGEAAEQFWTQTAERYDQRAHDIERPVLPPAELYLPPEKLREQLNKRLRVEVVEAGHEHAVDTGTQPAPELPLNRKGEEPGTSLRHFLSSYPGRVLIAADSAGRREALIETLAAAGLKPEVIEDWSVFLLPLRAGEGAKHEGPRFAITIAPLEQGFALTKPALAVLTERELYGERVRSERDRKRRRGTARDPESIIRDLTELTIGAPIVHVDHGVGRYQGLASMDVGGMDGEFLTIEYAKGDKLYVPVAQLGLVSRYSGTAPELAPLHSLGGDAWERARRKAAEKVRDVAAELLAIYAQRQARGGESMPIDRQMVEQFGSTFPFEETPDQETAIEAVLEDLAAPRAMDRVICGDVGFGKTEVALRAAFATATAGKQVAVLVPTTLLAQQHYRNFADRFADWPVRVDVLSRFKSTKEVNEALKRLADGQIDVIVGTHKLLQPDIRFKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLRDLSLIATPPAHRSAVRTFISAWDPATIREALQRELSRGGQVYFLHNEVQSIERIVRELEELVPEARIRIAHGQMPERELEGVMADFHRQRFNVLVCTTIIETGIDIPSANTIIINRADHFGLAQLHQLRGRVGRSHHRAYAYLVVPDRKSITADAQKRLEALASLEELGAGFTLATHDLEIRGAGELLGDEQSGQIQEIGFGLYTELLDRAVRALKSGKVPDFDLSSEHETEVELHLPALIPDDYLGDVHHRLTLYKRIASARSEDDLRDLQVEMIDRFGLLPDATKQLFAVASLKLMATPLGIRKLDFGPNGGRITFREKPEIDPMAIIRLIQQLPRVYKLDGQDKLKVILDLPGASERIRSAQEVLVLLGARRPG*