ggKbase home page

scnpilot_solids1_trim150_scaffold_551_curated_20

Organism: solids_Rhodanobacter_5

partial RP 37 / 55 MC: 2 BSCG 37 / 51 MC: 2 ASCG 10 / 38
Location: 21173..22516

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.1
  • Coverage: 432.0
  • Bit_score: 859
  • Evalue 2.70e-246
23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-) similarity KEGG
DB: KEGG
  • Identity: 88.1
  • Coverage: 445.0
  • Bit_score: 797
  • Evalue 2.80e-228
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6R4_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 98.1
  • Coverage: 432.0
  • Bit_score: 859
  • Evalue 1.90e-246

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1344
ATGTCCCGATCCAACTCCGTTTCGCCCAAACCCTTTGAAGCCACGATCACCGACCTCGGCCATGACGGCCGGGGCGTGGCGCGGATCGACGGCAAGACGGTCTTCGTCAGCGGCGGCCTGCTTGGCGAAACGGTGATCGCGAAGCTGCGCAAGCGTCATCGGCATTTCGACGAAGCCGAAGTGGTCGAGGTGATCACCGCCTCGCCGCACCGGGTCGAGCCGCGCTGCCAGCACTTCGCGCTGTGCAGCGGCTGTTCGCTGCAGCACCTCGATGCGTCCTCGCAGATCGCCGCCAAGCAGCGCGTGCTGGCCGAGAATTTCGAGCGCATCGGCAAGGTCACGCCGCAGTCGTGGTTGCCCCCGCTGACCGCCGAGCCCTGGGGCTACCGGCGCAAGGGCCGGTTGTCGGTGCGCAACGTGGCCAAGAAGGGCAGCGTGCTGGTCGGCTTCCGCGAAGAGCAGAACCCGCGCTTCGTCACCCCGATCCAGCGCTGCGAAGTGATGCACCCGTCGCTGGGCCCCAAGGTGGGTCTGCTGGCCGAACTGCTGGGCACGATGGACGCCGTCGACACCATTGCGCAGATCGAGTTCGCCGCCGGCGACGACCTGATGGCGCTGGTGTTCCGTCACCTGCAGCCGCTCAGCGAGCGCGATCTGGCGGCGCTCACCGCCTTCGGCCAGCAGCACGGCCTTGCGATCTACCTGCAGCCCGGCGGCGTCAGCAGCGTGCATCCGCTGTGGCCGGAACAGCCGCGGTTGGCCTTCCGCATCGCCAGCGACGATCCGCGTTTCGCCGACGTGGAACTGGAATTCCAGCCGCTGGATTTCGTGCAGGTCAACGCCGGCATGAACCAGCTGATGATGGCCCGCGCGATGGAACTGCTCGATCCGCAGCCGACCGATCGCGTGCTCGACCTGTTCTGTGGCCTGGGCAACTTCACCCTGCCGATCGCGCGCCGGGTGGCCGAGGTGGTGGGCGTGGAAGGCGAACACGGCCTGGTCGAACGCGCCGCACAGAATGCCGCACGCAACGGCATCGACAACGCGAAGTTCCACGTGGCCAACCTGTTCGAGGACCAGCGCCACACCGACTGGGCGAAGCAGCCGTGGGACAAGCTGCTGCTCGATCCGCCCCGCGCCGGCGCCGACAAGGTGCTGGAGTACCTGCCGCACAAGCAGACAAATCGCCTCGTCTACGTCTCCTGCCATCCCGCTTCGCTGGCGCGCGATGCCGGCATCCTGGTCAACCAGCACGGTTTCCGGCTGACCTCGGCCGGCGTGATGGACATGTTCCCGCATACCGCGCATGTGGAATCCATCGCCTTGTTTGAGCGGTCTTCCTGA
PROTEIN sequence
Length: 448
MSRSNSVSPKPFEATITDLGHDGRGVARIDGKTVFVSGGLLGETVIAKLRKRHRHFDEAEVVEVITASPHRVEPRCQHFALCSGCSLQHLDASSQIAAKQRVLAENFERIGKVTPQSWLPPLTAEPWGYRRKGRLSVRNVAKKGSVLVGFREEQNPRFVTPIQRCEVMHPSLGPKVGLLAELLGTMDAVDTIAQIEFAAGDDLMALVFRHLQPLSERDLAALTAFGQQHGLAIYLQPGGVSSVHPLWPEQPRLAFRIASDDPRFADVELEFQPLDFVQVNAGMNQLMMARAMELLDPQPTDRVLDLFCGLGNFTLPIARRVAEVVGVEGEHGLVERAAQNAARNGIDNAKFHVANLFEDQRHTDWAKQPWDKLLLDPPRAGADKVLEYLPHKQTNRLVYVSCHPASLARDAGILVNQHGFRLTSAGVMDMFPHTAHVESIALFERSS*