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scnpilot_solids1_trim150_scaffold_1390_curated_7

Organism: solids_Rhodanobacter_5

partial RP 37 / 55 MC: 2 BSCG 37 / 51 MC: 2 ASCG 10 / 38
Location: comp(9321..9893)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYA4_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 86.8
  • Coverage: 190.0
  • Bit_score: 328
  • Evalue 3.90e-87
RNA polymerase sigma factor {ECO:0000313|EMBL:EIL92195.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.8
  • Coverage: 190.0
  • Bit_score: 328
  • Evalue 5.50e-87
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 45.5
  • Coverage: 167.0
  • Bit_score: 146
  • Evalue 6.60e-33

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGGACGGTCCGCACAGTTTCATGGAACACCTCTCGCGCCACGACGACCTGCAGTTCGACCCTGCGCCCGCCCATGGCGAGGTGGTGGCGGCGCTGTATCGCGAGCATCACGCTGCGCTGGTGGCCCTGCTGCAGTGCCGGCTGAATTCGCGCAGCGACGCGCAGGAGATCGCGCAGGAGGTCTACGTGAAGTTGCTGACCATGAAGGGCCTTGACCACCTGGAAACGCCGCGTGCGTTCCTATTCCGCATGGCGATCAACCAGTCGGTGGATTACCTGCGCAAGCGCGTGGTGCGCGCCAACCTGTTGCTCCCACCCGTCCACGAGGATCTGCACGCCGCGCCGCTGCCCGAGCAGCACCTGTGGGCCGGCCAGCAATGGAAGAAGGTGCAGGCCGCCCTGCGCGAGTTGCCGGCCAAGTGCAGCCAGGCGTTCGTGCTGCACGTGCTGGAAGGCCGCGAGTTTTCCGCGATCGCCACCGAGATGAAGCTCAGCGAACGGATGGTTCGCTACCACGTCAGCCGGGCCATGGCGCACTGCCGCGAACGCTGTTTTGCAATGGAGACGCCGTGA
PROTEIN sequence
Length: 191
MDGPHSFMEHLSRHDDLQFDPAPAHGEVVAALYREHHAALVALLQCRLNSRSDAQEIAQEVYVKLLTMKGLDHLETPRAFLFRMAINQSVDYLRKRVVRANLLLPPVHEDLHAAPLPEQHLWAGQQWKKVQAALRELPAKCSQAFVLHVLEGREFSAIATEMKLSERMVRYHVSRAMAHCRERCFAMETP*