ggKbase | organisms

Consensus taxonomy: Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Sphingopyxis_68_7

Properties

Avg. coverage: 1.00 Longest contig: 11.62 Kbp Bin length: 1.44 Mbp GC content: 66.44 %

Contigs count: 641 Features count: 1838 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 29 / 55 BSCG 30 / 51 MC: 1 ASCG 8 / 38 MC: 1

Displaying items 351-400 of 641 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_39040_curated Species: Sphingopyxis sp. LC81 (50%)	2	1072 bp	65.49	1.00	68.56
scnpilot_solids1_trim150_scaffold_23859_curated Species: Sphingopyxis sp. LC81 (50%)	2	1504 bp	67.09	1.00	86.97
scnpilot_solids1_trim150_scaffold_15765_curated Species: Sphingopyxis sp. MC1 (50%)	2	1956 bp	65.49	1.00	77.45
scnpilot_solids1_trim150_scaffold_22308_curated Species: Sphingopyxis alaskensis (50%)	2	1519 bp	68.14	1.00	80.78
scnpilot_solids1_trim150_scaffold_33694_curated Species: Sphingopyxis sp. LC363 (50%)	2	1207 bp	67.85	1.00	89.23
scnpilot_solids1_trim150_scaffold_22452_curated Species: Sphingopyxis alaskensis (50%)	2	1568 bp	67.22	1.00	84.57
scnpilot_solids1_trim150_scaffold_36885_curated Species: Sphingopyxis alaskensis (50%)	2	1038 bp	69.75	1.00	80.35
scnpilot_solids1_trim150_scaffold_22513_curated Species: Sphingopyxis sp. MC1 (100%)	2	1602 bp	68.10	1.00	99.81
scnpilot_solids1_trim150_scaffold_15638_curated Species: Sphingopyxis fribergensis (50%)	2	2091 bp	66.52	1.00	99.43
scnpilot_solids1_trim150_scaffold_28911_curated Species: Sphingopyxis sp. LC363 (50%)	2	1218 bp	64.53	1.00	92.12
scnpilot_solids1_trim150_scaffold_23944_curated Species: Sphingopyxis sp. MC1 (50%)	2	1546 bp	65.78	1.00	87.32
scnpilot_solids1_trim150_scaffold_18871_curated Species: Sphingopyxis alaskensis (50%)	2	1713 bp	69.99	1.00	92.29
scnpilot_solids1_trim150_scaffold_29641_curated Species: Sphingopyxis fribergensis (50%)	2	2162 bp	63.83	1.00	47.73
scnpilot_solids1_trim150_scaffold_10654_curated Species: Sphingopyxis sp. MC1 (100%)	2	2753 bp	66.84	1.00	83.47
scnpilot_solids1_trim150_scaffold_23274_curated Species: Sphingopyxis sp. MC1 (50%)	2	1484 bp	67.12	1.00	96.23
scnpilot_solids1_trim150_scaffold_17234_curated	2	1952 bp	52.10	1.00	46.41
scnpilot_solids1_trim150_scaffold_35063_curated Species: Sphingopyxis sp. MC1 (100%)	2	1174 bp	67.63	1.00	99.15
scnpilot_solids1_trim150_scaffold_21969_curated Species: Sphingopyxis fribergensis (50%)	2	1582 bp	67.00	1.00	93.87
scnpilot_solids1_trim150_scaffold_11668_curated Species: Sphingopyxis fribergensis (50%)	2	2520 bp	64.80	1.00	92.02
scnpilot_solids1_trim150_scaffold_54647_curated Species: Sphingopyxis alaskensis (50%)	2	1463 bp	65.14	1.00	75.67
scnpilot_solids1_trim150_scaffold_43391_curated Species: Sphingobium herbicidovorans (50%)	2	873 bp	60.25	1.00	71.48
scnpilot_solids1_trim150_scaffold_37488_curated Species: Sphingopyxis sp. LC81 (100%)	2	1055 bp	66.35	1.00	80.19
scnpilot_solids1_trim150_scaffold_34356_curated Species: Sphingopyxis sp. MC1 (50%)	2	1296 bp	69.68	1.00	99.77
scnpilot_solids1_trim150_scaffold_31959_curated Species: Sphingopyxis fribergensis (50%)	2	1070 bp	67.76	1.00	86.36
scnpilot_solids1_trim150_scaffold_11314_curated Species: Sphingopyxis sp. MC1 (50%)	2	2624 bp	64.14	1.00	67.00
scnpilot_solids1_trim150_scaffold_15797_curated Species: Sphingopyxis fribergensis (50%)	2	2078 bp	67.52	1.00	94.42
scnpilot_solids1_trim150_scaffold_24337_curated Species: Sphingopyxis sp. MC1 (50%)	2	1528 bp	64.46	1.00	74.80
scnpilot_solids1_trim150_scaffold_12722_curated Species: Sphingopyxis fribergensis (50%)	2	2348 bp	68.40	1.00	96.85
scnpilot_solids1_trim150_scaffold_11268_curated Species: Sphingopyxis sp. MC1 (100%)	2	2521 bp	67.71	1.00	100.08
scnpilot_solids1_trim150_scaffold_23076_curated Species: Sphingopyxis sp. LC363 (50%)	2	1406 bp	71.69	1.00	61.66
scnpilot_solids1_trim150_scaffold_40595_curated Species: Sphingopyxis sp. MC1 (50%)	2	1012 bp	69.07	1.00	98.72
scnpilot_solids1_trim150_scaffold_34011_curated Species: Sphingopyxis sp. MC1 (100%)	2	1137 bp	63.85	1.00	91.56
scnpilot_solids1_trim150_scaffold_14866_curated Species: Sphingopyxis fribergensis (50%)	2	2126 bp	68.25	1.00	94.26
scnpilot_solids1_trim150_scaffold_9648_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)	2	2783 bp	67.37	1.00	87.85
scnpilot_solids1_trim150_scaffold_18169_curated Species: Sphingopyxis sp. MC1 (50%)	2	1878 bp	67.25	1.00	94.89
scnpilot_solids1_trim150_scaffold_10813_curated Species: Gordonia rhizosphera (50%)	2	764 bp	66.36	1.00	99.35
scnpilot_solids1_trim150_scaffold_31383_curated Species: Sphingopyxis alaskensis (50%)	2	1216 bp	65.30	1.00	29.61
scnpilot_solids1_trim150_scaffold_10813_e764_curated Species: Sphingopyxis sp. MC1 (50%)	2	1774 bp	71.03	1.00	87.77
scnpilot_solids1_trim150_scaffold_26462_curated Species: Sphingopyxis alaskensis (50%)	2	1321 bp	63.89	1.00	84.71
scnpilot_solids1_trim150_scaffold_10591_curated Species: Sphingopyxis sp. MC1 (50%)	2	2685 bp	64.77	1.00	88.83
scnpilot_solids1_trim150_scaffold_23332_curated Species: Sphingopyxis alaskensis (50%)	2	1509 bp	67.99	1.00	100.20
scnpilot_solids1_trim150_scaffold_38053_curated Species: Sphingopyxis sp. MC1 (50%)	2	1066 bp	68.39	1.00	100.19
scnpilot_solids1_trim150_scaffold_13031_curated Species: Sphingopyxis alaskensis (50%)	2	2133 bp	66.29	1.00	96.77
scnpilot_solids1_trim150_scaffold_33680_curated Species: Sphingopyxis sp. LC81 (50%)	2	1169 bp	67.49	1.00	100.34
scnpilot_solids1_trim150_scaffold_14776_curated Species: Mastigocladus laminosus (50%)	2	2097 bp	64.47	1.00	85.69
scnpilot_solids1_trim150_scaffold_22895_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)	2	1598 bp	65.96	1.00	89.55
scnpilot_solids1_trim150_scaffold_41062_curated Species: Sphingopyxis fribergensis (50%)	2	1044 bp	69.64	1.00	98.85
scnpilot_solids1_trim150_scaffold_10748_curated Species: Sphingopyxis sp. LC81 (50%)	2	2637 bp	64.88	1.00	93.86
scnpilot_solids1_trim150_scaffold_12233_curated Species: Sphingopyxis alaskensis (100%)	2	2221 bp	66.55	1.00	86.31
scnpilot_solids1_trim150_scaffold_27519_curated Species: Sphingopyxis sp. LC363 (50%)	2	1364 bp	64.00	1.00	68.40

Displaying items 351-400 of 641 in total

solids_Sphingopyxis_2

SCNPILOT_SOLID_1_TRIM150_Sphingopyxis_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Sphingopyxis_2

SCNPILOT_SOLID_1_TRIM150_Sphingopyxis_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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