ggKbase | organisms

Consensus taxonomy: Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Sphingopyxis_68_7

Properties

Avg. coverage: 1.00 Longest contig: 11.62 Kbp Bin length: 1.44 Mbp GC content: 66.44 %

Contigs count: 641 Features count: 1838 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 29 / 55 BSCG 30 / 51 MC: 1 ASCG 8 / 38 MC: 1

Displaying items 401-450 of 641 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_17624_curated Species: Sphingopyxis sp. MC1 (50%)	2	1919 bp	61.65	1.00	71.44
scnpilot_solids1_trim150_scaffold_23649_curated Species: Sphingopyxis sp. MC1 (100%)	2	1562 bp	71.06	1.00	78.17
scnpilot_solids1_trim150_scaffold_25554_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)	2	1477 bp	68.18	1.00	95.87
scnpilot_solids1_trim150_scaffold_34170_curated Species: Desulfovibrio desulfuricans (50%)	2	1125 bp	65.78	1.00	97.33
scnpilot_solids1_trim150_scaffold_20180_curated Species: Sphingopyxis alaskensis (50%)	2	1536 bp	67.51	1.00	82.23
scnpilot_solids1_trim150_scaffold_23284_curated Species: Sphingopyxis fribergensis (50%)	2	1311 bp	63.46	1.00	76.43
scnpilot_solids1_trim150_scaffold_43037_curated Species: Sphingopyxis alaskensis (100%)	2	1008 bp	62.30	1.00	58.04
scnpilot_solids1_trim150_scaffold_8139_curated Species: Sphingopyxis sp. LC363 (100%)	2	3248 bp	62.81	1.00	66.59
scnpilot_solids1_trim150_scaffold_23998_curated Species: Sphingopyxis sp. LC363 (50%)	2	1432 bp	67.11	1.00	99.09
scnpilot_solids1_trim150_scaffold_12999_curated Species: Sphingopyxis sp. MC1 (50%)	2	2277 bp	69.96	1.00	94.99
scnpilot_solids1_trim150_scaffold_39081_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)	2	1083 bp	71.10	1.00	99.72
scnpilot_solids1_trim150_scaffold_13890_curated Species: Sphingopyxis sp. LC363 (50%)	2	2182 bp	69.02	1.00	96.65
scnpilot_solids1_trim150_scaffold_49807_curated Species: Sphingopyxis sp. MC1 (50%)	2	1565 bp	64.28	1.00	94.12
scnpilot_solids1_trim150_scaffold_17092_curated Species: Sphingobium baderi (50%)	2	1680 bp	60.77	1.00	61.25
scnpilot_solids1_trim150_scaffold_39319_curated Species: Sphingopyxis alaskensis (50%)	2	1008 bp	67.16	1.00	80.65
scnpilot_solids1_trim150_scaffold_15651_curated Species: Sphingopyxis sp. MC1 (50%)	2	2092 bp	65.92	1.00	95.36
scnpilot_solids1_trim150_scaffold_26580_curated Species: Sphingopyxis sp. LC81 (50%)	2	1397 bp	70.08	1.00	89.76
scnpilot_solids1_trim150_scaffold_32894_curated Species: Sphingopyxis fribergensis (50%)	2	1239 bp	68.93	1.00	100.24
scnpilot_solids1_trim150_scaffold_17153_curated Species: Sphingopyxis fribergensis (50%)	2	1955 bp	64.96	1.00	99.28
scnpilot_solids1_trim150_scaffold_31648_curated Species: Sphingopyxis fribergensis (50%)	2	1240 bp	64.84	1.00	61.21
scnpilot_solids1_trim150_scaffold_23088_curated Species: Sphingopyxis alaskensis (50%)	2	1586 bp	68.28	1.00	89.85
scnpilot_solids1_trim150_scaffold_23193_curated Species: Sphingopyxis sp. MC1 (50%)	2	1556 bp	64.46	1.00	81.56
scnpilot_solids1_trim150_scaffold_36222_curated Species: Sphingopyxis macrogoltabida (50%)	2	1145 bp	66.99	1.00	64.45
scnpilot_solids1_trim150_scaffold_23016_curated Species: Sphingopyxis sp. LC363 (50%)	2	1592 bp	71.29	1.00	83.67
scnpilot_solids1_trim150_scaffold_22119_curated Species: Sphingopyxis sp. LC363 (50%)	2	1504 bp	65.43	1.00	69.81
scnpilot_solids1_trim150_scaffold_23699_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)	2	1408 bp	68.25	1.00	92.05
scnpilot_solids1_trim150_scaffold_36067_curated Species: Sphingopyxis sp. MC1 (100%)	2	1060 bp	67.55	1.00	86.32
scnpilot_solids1_trim150_scaffold_28578_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)	2	1360 bp	70.88	1.00	68.82
scnpilot_solids1_trim150_scaffold_41165_curated Species: Sphingopyxis fribergensis (50%)	2	1042 bp	58.35	1.00	74.86
scnpilot_solids1_trim150_scaffold_18645_curated Species: Sphingopyxis fribergensis (50%)	2	1772 bp	66.42	1.00	94.98
scnpilot_solids1_trim150_scaffold_22099_curated Species: Sphingopyxis alaskensis (50%)	2	1635 bp	69.60	1.00	83.30
scnpilot_solids1_trim150_scaffold_27613_curated Species: Sphingopyxis sp. MC1 (100%)	2	1394 bp	64.99	1.00	69.30
scnpilot_solids1_trim150_scaffold_34474_curated Species: Sphingopyxis sp. MC1 (50%)	2	1184 bp	69.34	1.00	97.04
scnpilot_solids1_trim150_scaffold_31589_curated Species: Sphingopyxis sp. MC1 (100%)	2	1234 bp	67.42	1.00	96.76
scnpilot_solids1_trim150_scaffold_23663_curated Species: Sphingopyxis sp. MC1 (50%)	2	2206 bp	63.83	1.00	71.12
scnpilot_solids1_trim150_scaffold_17396_curated Species: Sphingopyxis sp. MC1 (50%)	2	1811 bp	67.70	1.00	88.29
scnpilot_solids1_trim150_scaffold_29423_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)	2	1301 bp	66.64	1.00	100.08
scnpilot_solids1_trim150_scaffold_19730_curated Species: Sphingopyxis sp. MC1 (100%)	2	1045 bp	73.21	1.00	100.19
scnpilot_solids1_trim150_scaffold_42534_curated Species: Sphingopyxis sp. MC1 (50%)	2	950 bp	65.68	1.00	88.11
scnpilot_solids1_trim150_scaffold_37919_curated Species: Sphingopyxis sp. MC1 (100%)	2	1107 bp	68.47	1.00	99.46
scnpilot_solids1_trim150_scaffold_25638_curated Species: Sphingopyxis sp. LC363 (50%)	2	1469 bp	65.49	1.00	79.03
scnpilot_solids1_trim150_scaffold_14240_curated Species: Sphingopyxis sp. LC363 (50%)	2	2241 bp	57.74	1.00	79.25
scnpilot_solids1_trim150_scaffold_20473_curated Species: Sphingopyxis sp. LC363 (50%)	2	1709 bp	66.06	1.00	94.27
scnpilot_solids1_trim150_scaffold_15788_curated Species: Sphingopyxis sp. MC1 (100%)	2	1810 bp	65.47	1.00	80.06
scnpilot_solids1_trim150_scaffold_24679_curated Species: Sphingopyxis sp. MC1 (50%)	2	1513 bp	71.05	1.00	96.76
scnpilot_solids1_trim150_scaffold_38234_curated Species: Sphingopyxis sp. MC1 (100%)	2	916 bp	65.72	1.00	99.56
scnpilot_solids1_trim150_scaffold_35551_curated Species: Sphingopyxis alaskensis (50%)	2	1161 bp	66.58	1.00	93.02
scnpilot_solids1_trim150_scaffold_26386_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)	2	1443 bp	66.11	1.00	82.12
scnpilot_solids1_trim150_scaffold_13118_curated Species: Sphingopyxis sp. MC1 (100%)	2	2229 bp	69.54	1.00	93.94
scnpilot_solids1_trim150_scaffold_15270_curated Species: Sphingopyxis sp. LC81 (50%)	2	2056 bp	69.41	1.00	96.01

Displaying items 401-450 of 641 in total

solids_Sphingopyxis_2

SCNPILOT_SOLID_1_TRIM150_Sphingopyxis_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Sphingopyxis_2

SCNPILOT_SOLID_1_TRIM150_Sphingopyxis_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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