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scnpilot_solids1_trim150_scaffold_109_curated

Search features with annotation key words

Displaying items 61-90 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_109_curated_61
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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81556..82884
DNA (1329bp) protein (443aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FD0239
Membrane protein {ECO:0000313|EMBL:AJC47867.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein; K06143 inner membrane protein
scnpilot_solids1_trim150_scaffold_109_curated_62
unknown

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82881..83267
DNA (387bp) protein (129aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_109_curated_63

Not on your lists

83286..83519
DNA (234bp) protein (78aa)
Putative integron gene cassette protein (Fragment) n=1 Tax=uncultured bacterium RepID=B0BJS6_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAP49034.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_solids1_trim150_scaffold_109_curated_64
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83645..84250
DNA (606bp) protein (202aa)
Acetyltransferase, GNAT family n=4 Tax=Xanthomonas RepID=H1XI24_9XANT
Uncharacterized protein {ECO:0000313|EMBL:CEH55660.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_109_curated_65
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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84247..85128
DNA (882bp) protein (294aa)
Nitrilase n=7 Tax=Xanthomonas RepID=Q8PIP6_XANAC
nthA; nitrilase
Nitrilase {ECO:0000313|EMBL:AAM37694.1}; TaxID=190486 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. citri (strain 306).;"
scnpilot_solids1_trim150_scaffold_109_curated_66
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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85253..86845
DNA (1593bp) protein (531aa)
Peptidase M28 n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L399_9GAMM
Peptidase M28 {ECO:0000313|EMBL:EED40648.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
peptidase M28
scnpilot_solids1_trim150_scaffold_109_curated_67
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(86933..87340)
DNA (408bp) protein (136aa)
putative thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
thioesterase n=1 Tax=Xanthomonadaceae RepID=UPI000299F100
Thioesterase {ECO:0000313|EMBL:EQM81988.1}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
scnpilot_solids1_trim150_scaffold_109_curated_68
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87340..90300)
DNA (2961bp) protein (987aa)
UvrABC system protein A n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KL15_STEMA
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
uvrA; excinuclease ABC subunit A; K03701 excinuclease ABC subunit A
scnpilot_solids1_trim150_scaffold_109_curated_69
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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90583..90891
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=1 Tax=Xanthomonas arboricola RepID=UPI00030F95CA
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1418095 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni MAFF 301420.;"
scnpilot_solids1_trim150_scaffold_109_curated_70
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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90909..91169
DNA (261bp) protein (87aa)
50S ribosomal protein L27 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000027695E
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
rpmA; 50S ribosomal protein L27
scnpilot_solids1_trim150_scaffold_109_curated_71
unknown

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91291..92094
DNA (804bp) protein (268aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_109_curated_72
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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92081..93136
DNA (1056bp) protein (352aa)
GTPase CgtA n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031C5FE8
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
obgE; GTPase ObgE; K03979 GTP-binding protein
scnpilot_solids1_trim150_scaffold_109_curated_73
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(93526..93795)
DNA (270bp) protein (90aa)
30S ribosomal protein S20 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E34145
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
scnpilot_solids1_trim150_scaffold_109_curated_74
Xanthomonas perforans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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93911..95503
DNA (1593bp) protein (531aa)
Virulence factor n=2 Tax=Xanthomonas RepID=G2LWE4_9XANT
mviN; virulence factor; K03980 virulence factor
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; Flags: Precursor;; TaxID=925776 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas perforans 91-118.;"
scnpilot_solids1_trim150_scaffold_109_curated_75
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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95586..96593
DNA (1008bp) protein (336aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortorum pv. carotae str. M081.;"
ribC, ribF; bifunctional riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
Riboflavin kinase n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7ZFL3_9XANT
scnpilot_solids1_trim150_scaffold_109_curated_76
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

96651..99431
DNA (2781bp) protein (927aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
isoleucyl-tRNA synthetase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D535F5
scnpilot_solids1_trim150_scaffold_109_curated_77
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99506..100018
DNA (513bp) protein (171aa)
lspA; lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris.;"
Lipoprotein signal peptidase n=3 Tax=Xanthomonas campestris pv. campestris RepID=LSPA_XANC8
scnpilot_solids1_trim150_scaffold_109_curated_78
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

100078..101028
DNA (951bp) protein (317aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0T1X8_XANCT
scnpilot_solids1_trim150_scaffold_109_curated_79
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(101205..103967)
DNA (2763bp) protein (921aa)
TonB-dependent receptor plug n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K2A0_STEMA
TonB-dependent receptor {ECO:0000313|EMBL:EZP46022.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
TonB-dependent receptor plug
scnpilot_solids1_trim150_scaffold_109_curated_80
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(103976..104953)
DNA (978bp) protein (326aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037B2400
Putative transmembrane sensor {ECO:0000313|EMBL:EZP46023.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
anti-FecI sigma factor FecR
scnpilot_solids1_trim150_scaffold_109_curated_81
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(104950..105579)
DNA (630bp) protein (210aa)
RNA polymerase subunit sigma-24 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036222A5
RNA polymerase sigma factor nccH {ECO:0000313|EMBL:CCP15388.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
putative RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_solids1_trim150_scaffold_109_curated_82
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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105728..108634
DNA (2907bp) protein (969aa)
Autotransporter beta-domain protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KZ58_9GAMM
Autotransporter beta-domain protein {ECO:0000313|EMBL:EED39539.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
outer membrane autotransporter barrel domain-containing protein
scnpilot_solids1_trim150_scaffold_109_curated_83
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

108915..109955
DNA (1041bp) protein (347aa)
ubiquinol oxidase subunit II; K02297 cytochrome o ubiquinol oxidase subunit II [EC:1.10.3.-]
ubiquinol oxidase subunit II n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037E48E2
Ubiquinol oxidase, subunit II {ECO:0000313|EMBL:ACF50845.1}; Flags: Precursor;; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
scnpilot_solids1_trim150_scaffold_109_curated_84
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

109958..111958
DNA (2001bp) protein (667aa)
cytochrome o ubiquinol oxidase subunit I (EC:1.9.3.1); K02298 cytochrome o ubiquinol oxidase subunit I [EC:1.10.3.-]
cytochrome O ubiquinol oxidase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000373FDCD
Cytochrome o ubiquinol oxidase subunit I {ECO:0000313|EMBL:AHY59801.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_109_curated_85
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

111955..112593
DNA (639bp) protein (213aa)
cytochrome o ubiquinol oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-]
cytochrome O ubiquinol oxidase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036B94AD
Cytochrome o ubiquinol oxidase subunit III {ECO:0000313|EMBL:AHY59800.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_109_curated_86
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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112593..112934
DNA (342bp) protein (114aa)
cyoD; Cytochrome O ubiquinol oxidase subunit IV (EC:1.10.3.-); K02300 cytochrome o ubiquinol oxidase operon protein cyoD
Cytochrome O ubiquinol oxidase subunit IV n=3 Tax=Stenotrophomonas maltophilia RepID=I0KL40_STEMA
Stenotrophomonas maltophilia strain ZBG7B contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86793.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
scnpilot_solids1_trim150_scaffold_109_curated_87
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113057..115114)
DNA (2058bp) protein (686aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SP37_STRM5
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ACF50849.1}; Flags: Precursor;; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
diguanylate cyclase/phosphodiesterase
scnpilot_solids1_trim150_scaffold_109_curated_88
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115253..116629
DNA (1377bp) protein (459aa)
DNA repair protein RadA n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037B18E1
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
scnpilot_solids1_trim150_scaffold_109_curated_89
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116675..117145
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KZ45_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EED39641.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_109_curated_90
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(117174..117968)
DNA (795bp) protein (265aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003104F7D
CcsA-like protein
Membrane protein {ECO:0000313|EMBL:KDE91841.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
Displaying items 61-90 of 97 in total

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