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scnpilot_solids2_trim150_scaffold_378_curated_5

Organism: solids_Actinobacteria_2

near complete RP 45 / 55 MC: 2 BSCG 45 / 51 MC: 1 ASCG 10 / 38
Location: comp(4236..4775)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI0003627154 similarity UNIREF
DB: UNIREF100
  • Identity: 45.8
  • Coverage: 166.0
  • Bit_score: 123
  • Evalue 3.10e-25
sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 40.8
  • Coverage: 179.0
  • Bit_score: 121
  • Evalue 2.80e-25
Sigma-70, region 4 type 2 {ECO:0000313|EMBL:ABL83087.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 40.8
  • Coverage: 179.0
  • Bit_score: 121
  • Evalue 1.20e-24

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Taxonomy

Nocardioides sp. JS614 → Nocardioides → Propionibacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 540
GTGGACGATGCGTGGTTCGCGCAGTTGTACGAGGCCAGCTATCGGCGTCTGGTCGTGATCGTGCTGAGCGTGAGCAGCGACGTCGGTGTGGCCGAGGAGGTGGTGCAGGAGGCGTTCCTGCGGGCCTATGCGCGGCAGTCCCGGCTGCGCACCGTGCACAACCCGGAGGCGTGGGTCTGCACGGTCGCGTTGAACATCGCGCGGCGCCGGCGACGGCGCCACGGCATCGCGATGCGTGCGCTGCTGCGGCGCGCCGGGGACCCGACCCGCGCCGAGCGGCCGGACGGTTCGATCGTTGTCGATGACGAATTGATGGACGCGATCGCCGCGCTGCCGGACGGCCAGCGAGAGGCCGTGGTGCTGCACTACCTGGCCGACCTGCCGCTCGCGGAGGTGGCGGTGCGGACCGGGGTGGCCGAGGGAACCGTGAAATCCCGGCTCGCACGGGCCCGCTCGACGATGCAGCAGGCACTGCAAGACCGGCGGCCACACGGGGTCACGAACGCCGACTTGCTGCAGGAGGCGGAGGATCATGGATGA
PROTEIN sequence
Length: 180
VDDAWFAQLYEASYRRLVVIVLSVSSDVGVAEEVVQEAFLRAYARQSRLRTVHNPEAWVCTVALNIARRRRRRHGIAMRALLRRAGDPTRAERPDGSIVVDDELMDAIAALPDGQREAVVLHYLADLPLAEVAVRTGVAEGTVKSRLARARSTMQQALQDRRPHGVTNADLLQEAEDHG*