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scnpilot_solids2_trim150_scaffold_4406_curated_5

Organism: solids_Actinobacteria_3

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 ASCG 9 / 38
Location: 3917..4960

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Amycolatopsis orientalis HCCB10007 RepID=R4T824_AMYOR similarity UNIREF
DB: UNIREF100
  • Identity: 60.4
  • Coverage: 336.0
  • Bit_score: 388
  • Evalue 5.80e-105
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=208439 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.7
  • Coverage: 336.0
  • Bit_score: 391
  • Evalue 1.60e-105
rpoE; RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 60.4
  • Coverage: 336.0
  • Bit_score: 388
  • Evalue 1.80e-105

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Taxonomy

Amycolatopsis japonica → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1044
ATGCGATGGGAGACTCAGCCGATGAACGGCGAGGCGAGCACGGCGGCGACGCTGGCGCGCGCGAGGGCCGGTGACGATGAGGCGTTCCGCGCCCTCACCGAGCCCCATCGGCGCGAGCTGCAGGTTCACTGCTACCGGATCCTCGGCTCGCTGCAGGATGCCGAGGACGCGGTCCAGGAGACGCTGCTCGCGGCCTGGCGTGGGCTGGCGGGATTCGAGGAGCGCGCCTCGCTGCGCGCCTGGCTTTACCGGATCGCCACCAACCGTTGCCTCAATGCGCTCCGCGCCGGCGGCCGCAGGCCGAAGCTGATGGCCGGGAGCGGGCTCACCGACCCGCCGGAGCCGACCCGTCGCTCCGAGCCGATCTGGCTCCAGCCGTACCCCGACGACCTGCTGGAGGGACTGCCCGACGGCGTCCCGGGCCCCGATGCCCGCTACGAGGCCAAGGAGGCGGTCGGGCTCGCCTTCGTCTCCGGCCTGCAGCGGATGCCGCCGCAGCAGCGGGCGGTGCTGGTCCTGCGCGACGTGCTCGGCTACCGCGCCGGCGAGGTCGCCGCGATGCTGGACACGAGCGAGGCCTCGGTGAACAGCGCCCTGCAGCGGGCGCGGGCGGCGCTCGCGGCGGCGCCGGAGCGCCCGGTCGGCGGCGCCGTCCCCGACTCACCGGGTCGGCGACGCATCCTCGACCGCTTCGCCGAGGCCTTCGAGGTCGGCGACGTCGACACCGTGCTCGAGCTCCTCAGCGAGGACGCCTGGATCCGCATGCCACCGGAGCCGCTCGAATACAACGGCCGCCCGGCGATCGGCGAGTTCCTCCGCACGCGCCCACTCTGGCGCGAAGGCGAGCGACTGCGGATGGTCCCCGCCCGCGCCAACGGCCAACCCGCCTTCGCCTACTACCTCCCCGACTCCCAGGCCGACCTCTTCCGCATCGGCGGCATCTTCGTCCTCACCCTTGCGGACGACGAGATCGCCGCGATCACCCGCTTCGCCGAGGGCGGCTGGCTCCCCTGGTTCGGCCTGCCGCGGACGTTGCCAGGGTAG
PROTEIN sequence
Length: 348
MRWETQPMNGEASTAATLARARAGDDEAFRALTEPHRRELQVHCYRILGSLQDAEDAVQETLLAAWRGLAGFEERASLRAWLYRIATNRCLNALRAGGRRPKLMAGSGLTDPPEPTRRSEPIWLQPYPDDLLEGLPDGVPGPDARYEAKEAVGLAFVSGLQRMPPQQRAVLVLRDVLGYRAGEVAAMLDTSEASVNSALQRARAALAAAPERPVGGAVPDSPGRRRILDRFAEAFEVGDVDTVLELLSEDAWIRMPPEPLEYNGRPAIGEFLRTRPLWREGERLRMVPARANGQPAFAYYLPDSQADLFRIGGIFVLTLADDEIAAITRFAEGGWLPWFGLPRTLPG*