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scnpilot_solids2_trim150_scaffold_376_curated_25

Organism: solids_Alphaproteobacteria_1

near complete RP 50 / 55 BSCG 49 / 51 MC: 3 ASCG 11 / 38
Location: comp(29535..30452)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CR23_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 65.6
  • Coverage: 302.0
  • Bit_score: 398
  • Evalue 6.40e-108
LysR family transcriptional regulator; K03566 LysR family transcriptional regulator, glycine cleavage system transcriptional activator similarity KEGG
DB: KEGG
  • Identity: 65.6
  • Coverage: 302.0
  • Bit_score: 398
  • Evalue 2.00e-108
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS19868.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.6
  • Coverage: 302.0
  • Bit_score: 398
  • Evalue 9.00e-108

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 918
ATGAGTAGCCAGCGCCTGCCACCGCTCAACGCGCTGCGCGCCTTCGAGGCGACGGCTCGGCACCTGTCGATGAAGGAAGCGGCGGACGAACTGTGCGTCACGCCTGGCGCGGTGAGCCAGCTCATCAAGACGCTCGAAAGCGATCTCGGCGTGGCGCTCTTCCGGCGCGCCAACCGCGCGATCTTCCTGACCGACGCCGGACAGGACTATTTGCCCGCCATCCGCAACGCCTTTCGTCAGATCGGCGAGGCGACGCAGCGAATCGCGACGTCCGCCGAAACCGGCATCCTGACTCTTAGCACGACCAATTATTTTGCGTCCGCCTGGTTGGTCCCACGGCTGGCTGCCTTTCAGGATGCCTGCCCAGGTATCGATCTTCAATTGCGCACTGGCAAAGGGCTGGTGGATTTCACACGGGATGGCGTCGATGTCGCCATCCGCCACGGGCTTGGACGCTATCCCGGCTTGGTGAGCGAGCGGCTCTTCGCTGTCGAGATGGTGGCTGTCGCGGCCCCATCTTTGGCCAGCCGCTTCCAGGCGCCGACCAATCCGCGCGACTTGCTCGGCTGGCCGCATGTGCATGACGCCGATCGCAAGGACTGGAGCCTGTGGTTTCAAGCGCAAGGGATCGCGGATGTCGGCGCCCCGCACGGTCCAGCATTCGACGATTCGGGGCTGTTGCTACAGGCGGTGTTGGCAGGACAGGGTGCGGGTCTTGTACCTGCCGCCATCGTTGCGCGCGAGATCGAGGCAGGGCGGCTCATCCGGCTTTCTGGTCTCGTTTGGCCGGCGGCCTTTGCCTATTACCTCGTCTATCCCGAAGCCAATGCTCGGCGCCCAAAGGTCGCGTCGTTCCACGACTGGATTGTCAAAGTCTGCTACCCCCACGCCGAACAACTACCCAACAAAGTATGTTGA
PROTEIN sequence
Length: 306
MSSQRLPPLNALRAFEATARHLSMKEAADELCVTPGAVSQLIKTLESDLGVALFRRANRAIFLTDAGQDYLPAIRNAFRQIGEATQRIATSAETGILTLSTTNYFASAWLVPRLAAFQDACPGIDLQLRTGKGLVDFTRDGVDVAIRHGLGRYPGLVSERLFAVEMVAVAAPSLASRFQAPTNPRDLLGWPHVHDADRKDWSLWFQAQGIADVGAPHGPAFDDSGLLLQAVLAGQGAGLVPAAIVAREIEAGRLIRLSGLVWPAAFAYYLVYPEANARRPKVASFHDWIVKVCYPHAEQLPNKVC*