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scnpilot_solids2_trim150_scaffold_657_curated_24

Organism: solids_Alphaproteobacteria_1

near complete RP 50 / 55 BSCG 49 / 51 MC: 3 ASCG 11 / 38
Location: 30498..31010

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Novosphingobium sp. AP12 RepID=J2PMV3_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 55.8
  • Coverage: 165.0
  • Bit_score: 166
  • Evalue 1.80e-38
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL28932.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.8
  • Coverage: 165.0
  • Bit_score: 166
  • Evalue 2.50e-38
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 54.5
  • Coverage: 165.0
  • Bit_score: 162
  • Evalue 1.40e-37

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Taxonomy

Novosphingobium sp. AP12 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 513
ATGAGCGAATCAACCGAATCGATCCGTAACAGGATGATTGCGCTTGTGCCGCGATTGCGCCGGTTTGCGCTATCGCTGACTGGAAACACGGCGGATGCCGACGATCTGGTGCAGGACACGGTGGAGCGGGCATTGCGCAATCTTCATCGCTGGCAGGAAGGGACACGATTGGATAGCTGGATGTTCCGTATTGCCCAAAACCTCTGGATCGACGCTGTTCGGGCCAGGCGCGTGCGTGCGGCGGTGCCGCTGGACGAACGCCATGGCGAGCCGGTCGATGGTGTGCGCAACGCGGAAGCACGGCTTGTTTTCGCAGACACTTGCCGCGCGCTGGCAAGCCTGCCCGAAGAGCAGCGCGTTGTCGTGGCCCTCGTGCTCGTGGATGGAATGGCCTATCGCGATGCGGCCGAGATTCTTGGCGTTCCGATCGGAACGGTGACAAGCAGGCTTGCCCGCGCGCGCGAAGCATTGACCGCGCGCGTGCTGGCGGAAAAAGCGGAAACACCGGCATGA
PROTEIN sequence
Length: 171
MSESTESIRNRMIALVPRLRRFALSLTGNTADADDLVQDTVERALRNLHRWQEGTRLDSWMFRIAQNLWIDAVRARRVRAAVPLDERHGEPVDGVRNAEARLVFADTCRALASLPEEQRVVVALVLVDGMAYRDAAEILGVPIGTVTSRLARAREALTARVLAEKAETPA*