ggKbase home page

scnpilot_solids2_trim150_scaffold_132_curated_22

Organism: solids_Bacteroidetes_1

near complete RP 49 / 55 BSCG 46 / 51 ASCG 13 / 38 MC: 1
Location: comp(24100..24681)

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L25 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSZ2_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 45.6
  • Coverage: 193.0
  • Bit_score: 186
  • Evalue 1.90e-44
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 similarity KEGG
DB: KEGG
  • Identity: 45.6
  • Coverage: 193.0
  • Bit_score: 186
  • Evalue 5.80e-45
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.6
  • Coverage: 193.0
  • Bit_score: 186
  • Evalue 2.60e-44

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 582
ATGGAAACAGTTATCATTAACGGCACGGCAAGAACCGAATTAGGTAAAAAGGCTACCCGTGCGCTGCGTGAAGCAGGAAATGTGCCTTGTAATCTTTATGGTGGCGAAGGAAATGTAAATTTCTATGCACCGGCAACTGAGTTTAAAGCAATAGTTTACACCAGCGATTTTAAAACTGCTGAGGTAAACGTAGGAGGAAAATCTTACAAAGCGATTTTAAAAGAAATTCAGTTTGATGCAGTTACTGATGCAATCAAACACTTGGATTTTCAACAACTTGTTGATGGAAAAGCTGTAAAAGTTAGCTTGCCACTACACTTAAAAGGAACACCAAAAGGTGCTGCTACGGGTGGTAAATTAGAGCAAACAGTAAAACGTCTTAATGTATTCGCGGCTCCTGAGCATTTACGCGCAGCAATTGAGCTAAACGTAGAAGATATGGACATGGGCGGAATTAAGCGAGTTAAAGACATAGAAGTTGAAGGCTTAGAATTATTACACGCTCCTGCAATTCCGGTTGCCAGAGTGAGCGTACCTCGTGCGGCAAAAGAAGCAGCTGCAGCAGAGGCTAAAAAGAAATAG
PROTEIN sequence
Length: 194
METVIINGTARTELGKKATRALREAGNVPCNLYGGEGNVNFYAPATEFKAIVYTSDFKTAEVNVGGKSYKAILKEIQFDAVTDAIKHLDFQQLVDGKAVKVSLPLHLKGTPKGAATGGKLEQTVKRLNVFAAPEHLRAAIELNVEDMDMGGIKRVKDIEVEGLELLHAPAIPVARVSVPRAAKEAAAAEAKKK*