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scnpilot_solids2_trim150_scaffold_134_curated

Search features with annotation key words

Displaying items 61-90 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_134_curated_61
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54646..55794)
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003630F3D
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEJ93893.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_134_curated_62
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55860..56318)
DNA (459bp) protein (153aa)
phenylacetic acid degradation protein PaaD; K02614 acyl-CoA thioesterase [EC:3.1.2.-]
Phenylacetic acid degradation protein PaaD n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V626_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEJ93892.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
scnpilot_solids2_trim150_scaffold_134_curated_63
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56315..57103)
DNA (789bp) protein (263aa)
enoyl-CoA hydratase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
Enoyl-CoA hydratase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GXL7_9PROT
Enoyl-CoA hydratase {ECO:0000313|EMBL:KEJ93891.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
scnpilot_solids2_trim150_scaffold_134_curated_64
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57456..58304
DNA (849bp) protein (283aa)
Phenylacetate-responsive transcriptional repressor n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z5P0_AZOL4
Uncharacterized protein {ECO:0000313|EMBL:KEJ93890.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
paaX; phenylacetate-responsive transcriptional repressor; K02616 phenylacetic acid degradation operon negative regulatory protein
scnpilot_solids2_trim150_scaffold_134_curated_65
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58459..59997
DNA (1539bp) protein (513aa)
UPI0003C7F239 related cluster n=1 Tax=unknown RepID=UPI0003C7F239
Uncharacterized protein {ECO:0000313|EMBL:KEJ93889.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
Ibuprofen CoA ligase
scnpilot_solids2_trim150_scaffold_134_curated_66
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60035..60508
DNA (474bp) protein (158aa)
UPI0003C7DDF4 related cluster n=1 Tax=unknown RepID=UPI0003C7DDF4
Uncharacterized protein {ECO:0000313|EMBL:KEJ93888.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
monoamine oxidase regulatory protein, putative
scnpilot_solids2_trim150_scaffold_134_curated_67
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60480..61658
DNA (1179bp) protein (393aa)
Epoxide hydrolase n=2 Tax=Actinomycetales RepID=I1Y9H2_9MICC
Uncharacterized protein {ECO:0000313|EMBL:KEJ93887.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
epoxide hydrolase domain-containing protein
scnpilot_solids2_trim150_scaffold_134_curated_68
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61746..62531
DNA (786bp) protein (262aa)
Putative 3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AMA5_AZOBR
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:AIB11406.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
putative 3-oxoacyl-(acyl-carrier-protein) reductase
scnpilot_solids2_trim150_scaffold_134_curated_69
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62704..63738
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZFX3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIT70809.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
LacI family transcriptional regulator
scnpilot_solids2_trim150_scaffold_134_curated_70
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63773..65221)
DNA (1449bp) protein (483aa)
NAD-dependent aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003620852
Aldehyde dehydrogenase {ECO:0000313|EMBL:KHK89116.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
scnpilot_solids2_trim150_scaffold_134_curated_71
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65248..66834)
DNA (1587bp) protein (529aa)
betA; choline dehydrogenase, a flavoprotein (EC:1.1.99.1); K00108 choline dehydrogenase [EC:1.1.99.1]
Choline dehydrogenase, a flavoprotein alcohol dehydrogenase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S0X3_9BRAD
Choline dehydrogenase {ECO:0000313|EMBL:KHK89117.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
scnpilot_solids2_trim150_scaffold_134_curated_72
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66831..67937)
DNA (1107bp) protein (369aa)
FAD dependent oxidoreductase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VF16_SPHWW
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KHK89118.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
FAD dependent oxidoreductase
scnpilot_solids2_trim150_scaffold_134_curated_73
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68006..68449
DNA (444bp) protein (148aa)
thioesterase n=1 Tax=Comamonas sp. B-9 RepID=UPI00039581AE
Putative thioesterase {ECO:0000313|EMBL:EJE50409.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
thioesterase superfamily protein
scnpilot_solids2_trim150_scaffold_134_curated_74
unknown

Not on your lists

68510..68773
DNA (264bp) protein (88aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_134_curated_75
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68748..70052)
DNA (1305bp) protein (435aa)
Conjugal transfer protein TraB n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JSU8_9RHIZ
Conjugal transfer protein TraB {ECO:0000313|EMBL:KGF70628.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
traB; conjugal transfer protein TraB
scnpilot_solids2_trim150_scaffold_134_curated_76
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70500..73811)
DNA (3312bp) protein (1104aa)
Conujugal transfer protein TraA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF79_NITHX
Dtr system oriT relaxase {ECO:0000313|EMBL:KKB84725.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Dtr system oriT relaxase
scnpilot_solids2_trim150_scaffold_134_curated_77
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74068..74331
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00038156D3
Conjugal transfer protein TraC {ECO:0000313|EMBL:KGF70627.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
traCb; conjugal transfer protein TraC
scnpilot_solids2_trim150_scaffold_134_curated_78
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74336..74551
DNA (216bp) protein (72aa)
Putative TraD n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT18_9RHIZ
Conjugal transfer protein TraD {ECO:0000313|EMBL:KGF70626.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
traD; conjugal transfer protein TraD
scnpilot_solids2_trim150_scaffold_134_curated_79
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74538..76466
DNA (1929bp) protein (643aa)
conjugal transfer protein TraG n=1 Tax=Rhizobium giardinii RepID=UPI000368BA55
Conjugal transfer protein TraG {ECO:0000313|EMBL:KGF70625.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
scnpilot_solids2_trim150_scaffold_134_curated_80
unknown

Not on your lists

76441..77394
DNA (954bp) protein (318aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_134_curated_81
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77233..78228)
DNA (996bp) protein (332aa)
Beta-lactamase domain protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IF14_XANP2
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ABS66607.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_134_curated_82
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78929..79852
DNA (924bp) protein (308aa)
Transposase-related protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5QA67_9RHIZ
Transposase {ECO:0000313|EMBL:KGD96339.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
transposase IS4 family protein
scnpilot_solids2_trim150_scaffold_134_curated_83
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79849..80295
DNA (447bp) protein (149aa)
Mobile element protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RQJ9_9RHIZ
Mobile element protein {ECO:0000313|EMBL:ESR25395.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
transposase-related protein
scnpilot_solids2_trim150_scaffold_134_curated_84
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80461..80778)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT22_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM72724.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_85
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81125..81781)
DNA (657bp) protein (219aa)
Uncharacterized protein n=2 Tax=Phyllobacteriaceae RepID=Q11MS6_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG61293.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_134_curated_86
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81781..82710)
DNA (930bp) protein (310aa)
Conserved domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QRL6_9RHOB
Conserved domain protein {ECO:0000313|EMBL:EEE48129.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
ArdC gene in pSa(IncW plasmid)-like protein
scnpilot_solids2_trim150_scaffold_134_curated_87
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82955..83140)
DNA (186bp) protein (62aa)
Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QRL8_9RHOB
Putative uncharacterized protein {ECO:0000313|EMBL:EEE48176.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_88
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83468..83863)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BZS6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGF70620.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_89
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83856..84110)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KNX6_RHISN
Prevent-host-death protein {ECO:0000313|EMBL:KGF70619.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_134_curated_90
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84219..84806)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT29_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGF70618.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein
Displaying items 61-90 of 104 in total

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