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scnpilot_solids2_trim150_scaffold_1754_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1754_curated_1
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..62)
DNA (60bp) protein (20aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I1Y7_RHOVT
Cation transporter {ECO:0000313|EMBL:KAI95397.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
CzcA family heavy metal efflux pump; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA
scnpilot_solids2_trim150_scaffold_1754_curated_2
unknown

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comp(85..3237)
DNA (3153bp) protein (1051aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1754_curated_3
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3234..4649)
DNA (1416bp) protein (472aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HCK9_9BRAD
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ERF82206.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
secretion protein HlyD
scnpilot_solids2_trim150_scaffold_1754_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4646..5053)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJN1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38598.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1754_curated_5
unknown

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comp(5185..5523)
DNA (339bp) protein (113aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1754_curated_6
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5520..6917)
DNA (1398bp) protein (466aa)
Multidrug abc transporter atpase permease n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CSL7_9RHIZ
multidrug ABC transporter ATPase/permease
Multidrug abc transporter atpase permease {ECO:0000313|EMBL:EIZ87182.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
scnpilot_solids2_trim150_scaffold_1754_curated_7
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7372..7875)
DNA (504bp) protein (168aa)
Methylobacterium aquaticum plasmid pMaq22A_1p DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ49311.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
scnpilot_solids2_trim150_scaffold_1754_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7951..8247)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00035C268E
Uncharacterized protein {ECO:0000313|EMBL:KFC63740.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1754_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8300..8794)
DNA (495bp) protein (165aa)
Blue (Type 1) copper domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IXR5_METNO
Copper tolerance protein {ECO:0000313|EMBL:KFC63739.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
blue (type 1) copper domain-containing protein
scnpilot_solids2_trim150_scaffold_1754_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8844..10253)
DNA (1410bp) protein (470aa)
Multicopper oxidase type 3 n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IP77_XANP2
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:KFC63738.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
multicopper oxidase type 3
scnpilot_solids2_trim150_scaffold_1754_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10271..11728)
DNA (1458bp) protein (486aa)
Outer membrane efflux protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IPU2_XANP2
Outer membrane efflux protein {ECO:0000313|EMBL:KFC63737.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
outer membrane efflux protein
scnpilot_solids2_trim150_scaffold_1754_curated_12
unknown

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comp(12136..12537)
DNA (402bp) protein (134aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1754_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12745..13206
DNA (462bp) protein (154aa)
Cytochrome b561 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UWK0_9RHIZ
Putative transmembrane cytochrome b562 {ECO:0000313|EMBL:CDN95858.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
putative transmembrane cytochrome b562
Displaying 13 items

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