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scnpilot_solids2_trim150_scaffold_235_curated

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_235_curated_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2..916
DNA (915bp) protein (305aa)
pseudouridine synthase Rsu; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Pseudouridine synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRT1_NIAKG
scnpilot_solids2_trim150_scaffold_235_curated_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

924..1646
DNA (723bp) protein (241aa)
pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035C1355
scnpilot_solids2_trim150_scaffold_235_curated_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1990..4368)
DNA (2379bp) protein (793aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
ribonucleoside-diphosphate reductase subunit alpha; K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PC87_CHIPD
scnpilot_solids2_trim150_scaffold_235_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(4447..4803)
DNA (357bp) protein (119aa)
S23 ribosomal protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NRN4_9SPHI
30S ribosomal protein S23 {ECO:0000313|EMBL:AHF15994.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
S23 ribosomal protein
scnpilot_solids2_trim150_scaffold_235_curated_5
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4969..5937)
DNA (969bp) protein (323aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
ribonucleoside-diphosphate reductase; K10808 ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
ribonucleoside-diphosphate reductase n=1 Tax=Pedobacter agri RepID=UPI00029A9349
scnpilot_solids2_trim150_scaffold_235_curated_6
unknown

Not on your lists

6509..6829
DNA (321bp) protein (107aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_235_curated_7
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6801..7211
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003639570
Uncharacterized protein {ECO:0000313|EMBL:AKD58277.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
3-demethylubiquinone-9 3-methyltransferase; K04750 PhnB protein
scnpilot_solids2_trim150_scaffold_235_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7452..7880
DNA (429bp) protein (143aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NKT5_9SPHI
ATPase {ECO:0000313|EMBL:AHF14407.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
activator of Hsp90 ATPase 1 family protein
scnpilot_solids2_trim150_scaffold_235_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7942..8325
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035DD107
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02192.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_235_curated_10
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8493..9230
DNA (738bp) protein (246aa)
beta-lactamase (EC:3.5.2.6); K01467 beta-lactamase [EC:3.5.2.6]
Beta-lactamase n=1 Tax=Flavobacterium sp. F52 RepID=J1KWT1_9FLAO
Beta-lactamase {ECO:0000313|EMBL:EJG02718.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
scnpilot_solids2_trim150_scaffold_235_curated_11
GWF2_Lentisphaerae_38_69_curated, Lentisphaerae, Bacteria

Not on your lists

9959..12595
DNA (2637bp) protein (879aa)
putative type III restriction-modification system, methylation subunit (EC:2.1.1.72); K00571 site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
Putative type III restriction-modification system, methylation subunit id=2862519 bin=GWF2_Lentisphaerae_38_69 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
Tax=GWF2_Lentisphaerae_38_69_curated
scnpilot_solids2_trim150_scaffold_235_curated_12
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12597..13415
DNA (819bp) protein (273aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FSZ0_9FLAO
hypothetical protein
Tax=GWA2_Bacteroidetes_31_9_curated
scnpilot_solids2_trim150_scaffold_235_curated_13
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

13419..16628
DNA (3210bp) protein (1070aa)
Putative type III restriction-modification system Res subunit {ECO:0000313|EMBL:GAN34946.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
Type III restriction enzyme, res subunit id=2862530 bin=GWF2_Lentisphaerae_38_69 species=Oscillatoria sp. PCC 6506 genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
hypothetical protein
scnpilot_solids2_trim150_scaffold_235_curated_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16777..17751
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Imtechella halotolerans K1 RepID=I0WBX7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIC94526.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
TIM-barrel fold metal-dependent hydrolase
scnpilot_solids2_trim150_scaffold_235_curated_15
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17815..18714
DNA (900bp) protein (300aa)
Putative lipase/esterase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EG34_RUNSL
putative lipase/esterase
Putative lipase/esterase {ECO:0000313|EMBL:AEI46914.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids2_trim150_scaffold_235_curated_16
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18733..19494)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002DC3326
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL44065.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
scnpilot_solids2_trim150_scaffold_235_curated_17
Virgibacillus sp. SK37, Virgibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19558..20010)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Virgibacillus halodenitrificans RepID=UPI0002D5EE10
Uncharacterized protein {ECO:0000313|EMBL:AIF42287.1}; TaxID=403957 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Virgibacillus.;" source="Virgibacillus sp. SK37.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_235_curated_18

Not on your lists

20611..21723
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003653D93
Putative acyltransferase 3 {ECO:0000313|EMBL:AGC09659.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
acyltransferase family protein
scnpilot_solids2_trim150_scaffold_235_curated_19
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21720..22334
DNA (615bp) protein (205aa)
Methyltransferase family protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CK50_9GAMM
Methyltransferase family protein {ECO:0000313|EMBL:EIJ43993.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
type 11 methyltransferase
scnpilot_solids2_trim150_scaffold_235_curated_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22431..23420)
DNA (990bp) protein (330aa)
PfkB domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7D2_NIAKG
PfkB domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:AEW01168.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_235_curated_21
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23686..25107)
DNA (1422bp) protein (474aa)
Amino acid permease-associated region n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7P9X3_CHIPD
amino acid permease-associated protein; K03294 basic amino acid/polyamine antiporter, APA family
Amino acid permease-associated region {ECO:0000313|EMBL:ACU59210.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_235_curated_22
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25165..25776)
DNA (612bp) protein (204aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7P9X2_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIC90317.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
outer membrane chaperone Skp; K06142 outer membrane protein
scnpilot_solids2_trim150_scaffold_235_curated_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25855..30147)
DNA (4293bp) protein (1431aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7D5_NIAKG
scnpilot_solids2_trim150_scaffold_235_curated_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30216..34025)
DNA (3810bp) protein (1270aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7D6_NIAKG
scnpilot_solids2_trim150_scaffold_235_curated_25
Maribacter sp. HTCC2170, Maribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(34447..35403)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00031E20C7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAR02034.1}; TaxID=313603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter.;" source="Maribacter sp. (strain HTCC2170 / KCCM 42371).;"
scnpilot_solids2_trim150_scaffold_235_curated_26
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35433..36635)
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037D7751
Putative oxidoreductase {ECO:0000313|EMBL:GAO44627.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
FAD-dependent oxidoreductase
scnpilot_solids2_trim150_scaffold_235_curated_27
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(36729..37610)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037BA94C
Uncharacterized protein {ECO:0000313|EMBL:KIC90591.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
sugar kinase
scnpilot_solids2_trim150_scaffold_235_curated_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(37693..38286)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NS66_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF16044.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_235_curated_29
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(38706..39206)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ER58_RUNSL
Uncharacterized protein {ECO:0000313|EMBL:GAO42303.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_235_curated_30
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(39225..40256)
DNA (1032bp) protein (344aa)
Helix-turn-helix domain protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GU29_9BACT
Uncharacterized protein {ECO:0000313|EMBL:GAO42302.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
Displaying items 1-30 of 50 in total

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