ggKbase home page

scnpilot_solids2_trim150_scaffold_68_curated_24

Organism: solids_Sphingobacteriales_3

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 18789..20228

Top 3 Functional Annotations

Value Algorithm Source
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.0
  • Coverage: 480.0
  • Bit_score: 746
  • Evalue 2.80e-212
hypothetical protein; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3] similarity KEGG
DB: KEGG
  • Identity: 70.3
  • Coverage: 485.0
  • Bit_score: 692
  • Evalue 8.10e-197
RNA-splicing ligase RtcB n=1 Tax=Niabella soli DSM 19437 RepID=H1NTZ8_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 75.0
  • Coverage: 480.0
  • Bit_score: 746
  • Evalue 2.00e-212

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Niabella soli → Niabella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1440
ATGAGCAAATTAAAAATAACAGGAAAAGAATTACGCGCTACCGGCTACCCGCAGGGCCCGGTGATCAGCGTGGCAATGAATGTGATGCAGAAACATTACAAGCATCACACAAAAGAGAAAGTGATGGAAATATTGAAGCGTGTATTGGAAAGCCCGGTACAATATAAAGATGATGTCGTATTGGCAGTGATAGCGGAGCAATTATTGCCCAAAGCGCCAAAAGAGGACGCAACAATTTCATTGAACAACCAGGGTATTCCGTTCAATGTATTCGGACAGGAACACATTGAAGAAGGCGCCCTGCACCAGATGTATGTCGCGGCTAAATTGCCGGTGGCAGTTGCGGGCGCATTGATGCCTGATGCACACAGCGGTTATGGCTTGCCGATAGGCGGTGTTCTGGCAACGGATAACGCCGTGATACCGTATGGCGTGGGAGTGGACATTGGCTGCCGCATGTGCCTGAGTGTTTTCGATATCAATCCAAAAGAGCTTACGCAGCGGGAAACTTCTTTTGCAAGGGAATTAAATGAAGCCACCCTTTTTGGAAGCGGCGCACAGTTTGACCGGGCATCAGATCATGAAGTAATGGAACATGCCGCATTTTATGAAATGCCTTTGCTGAAAAGTTTGCACGAACGCGCATGGAAACAATTGGGATCTTCCGGAAGTGGCAATCATTTCGTGGAGTTTGGCATAGTGGATATTGCAGAAAAGGATCCGGTACTGGGCATTGAACCCGGAAGTTATGTGGGATTGTTATCGCATTCCGGTTCCAGGGCGCTGGGTGCTACTATTGCAAATCATTATACTAAAATTGCGATCAGCAAAAGACGTTTACCACAGGATGCAAAAAATCTGGCGTGGTTGAATATGGATGAAGAAGCAGGAATAGAATACTGGATCGCCATGAACCTGGCGGGTGATTATGCTTCTGCATGTCATCACATTATTCACGAAAAAATTTCGAAACAGTTAGGACGTAAACCTCTTAAGAGGATAGAGAATCACCACAACTTTGCATGGAAGGAACAATGGGAAGGTAAGGAGGTAATTGTACACCGTAAAGGCGCTACACCTGCCGGAAAGGATGTATTGGGCATCATTCCCGGCTCTATGACAGCGGATGGGTATATTGTAAAAGGGAAAGGCGAACCGGCGGCTGTTAACTCGGCTTCCCACGGCGCAGGAAGGTTGATGAGCCGTACCAGAGCAATGCAGTCCATTACCGAAAATGCATTGAAGCAGGAACTGAAAAAGCATAGCGTGAAGCTGATCGGCGGAGGGCTGGATGAAGCGCCTTTCGCCTATAAGGATATTCATGTGGTAATGCAAAGTCAGCGGCAGTTGGTAGATGTGGTGGGAAGATTCACTCCCAGAATCGTAAAAATGGACGGCGCAAAGCATAAAACATGGGGAAAGAAGACAAGAGAAATGTAG
PROTEIN sequence
Length: 480
MSKLKITGKELRATGYPQGPVISVAMNVMQKHYKHHTKEKVMEILKRVLESPVQYKDDVVLAVIAEQLLPKAPKEDATISLNNQGIPFNVFGQEHIEEGALHQMYVAAKLPVAVAGALMPDAHSGYGLPIGGVLATDNAVIPYGVGVDIGCRMCLSVFDINPKELTQRETSFARELNEATLFGSGAQFDRASDHEVMEHAAFYEMPLLKSLHERAWKQLGSSGSGNHFVEFGIVDIAEKDPVLGIEPGSYVGLLSHSGSRALGATIANHYTKIAISKRRLPQDAKNLAWLNMDEEAGIEYWIAMNLAGDYASACHHIIHEKISKQLGRKPLKRIENHHNFAWKEQWEGKEVIVHRKGATPAGKDVLGIIPGSMTADGYIVKGKGEPAAVNSASHGAGRLMSRTRAMQSITENALKQELKKHSVKLIGGGLDEAPFAYKDIHVVMQSQRQLVDVVGRFTPRIVKMDGAKHKTWGKKTREM*