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scnpilot_solids2_trim150_scaffold_56_curated

Search features with annotation key words

Displaying items 181-210 of 315 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_56_curated_181
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(208089..209432)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7P9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95490.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Fe-S oxidoreductase
scnpilot_solids2_trim150_scaffold_56_curated_182
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(209611..210030)
DNA (420bp) protein (140aa)
Rubrerythrin n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7P8_9GAMM
Rubrerythrin {ECO:0000313|EMBL:EIL95489.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
rubrerythrin
scnpilot_solids2_trim150_scaffold_56_curated_183
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(210308..210721)
DNA (414bp) protein (138aa)
GreA/GreB family elongation factor id=2643717 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
transcription elongation factor
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_solids2_trim150_scaffold_56_curated_184
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(210723..211700)
DNA (978bp) protein (326aa)
LysR family transcriptional regulator n=1 Tax=Rudaea cellulosilytica RepID=UPI000364D98A
LysR family transcriptional regulator {ECO:0000313|EMBL:EIL92081.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_56_curated_185
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

211864..212403
DNA (540bp) protein (180aa)
alkyl hydroperoxide reductase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3EB49
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KGI77138.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ahpC; alkyl hydroperoxide reductase, peroxiredoxin
scnpilot_solids2_trim150_scaffold_56_curated_186
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

212505..213068
DNA (564bp) protein (188aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087942}; EC=1.11.1.15 {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087930};; Alkylhydroperoxidase AhpD {ECO:0000256|HAMAP-Rule:MF_01676}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
alkylhydroperoxidase, AhpD protein (EC:1.11.1.-); K04756 alkyl hydroperoxide reductase subunit D
alkyl hydroperoxide reductase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5579A
scnpilot_solids2_trim150_scaffold_56_curated_187
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(213072..214001)
DNA (930bp) protein (310aa)
RpiR family transcriptional regulator n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZX1_9GAMM
RpiR family transcriptional regulator {ECO:0000313|EMBL:EIL92762.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_56_curated_188
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(214039..215055)
DNA (1017bp) protein (339aa)
Mandelate racemase/muconate lactonizing enzyme n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3L9_9GAMM
Mandelate racemase/muconate lactonizing enzyme {ECO:0000313|EMBL:EIL94060.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
mandelate racemase/muconate lactonizing enzyme
scnpilot_solids2_trim150_scaffold_56_curated_189
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(215100..217073)
DNA (1974bp) protein (658aa)
Beta-lactamase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3M0_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EIL94061.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
beta-lactamase
scnpilot_solids2_trim150_scaffold_56_curated_190
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(217070..218440)
DNA (1371bp) protein (457aa)
Amino acid permease-associated region n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WR04_ALIAD
amino acid permease
Amino acid permease-associated region {ECO:0000313|EMBL:ACV59173.1}; TaxID=521098 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC; 27009 / DSM 446 / JCM 5260 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 /; 104-1A) (Bacillus acidocaldarius).;"
scnpilot_solids2_trim150_scaffold_56_curated_191
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(218445..220472)
DNA (2028bp) protein (676aa)
Beta-lactamase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W931_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EIL95972.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
beta-lactamase
scnpilot_solids2_trim150_scaffold_56_curated_192
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(220609..222948)
DNA (2340bp) protein (780aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZX5_9GAMM
TonB-dependent receptor {ECO:0000313|EMBL:EIL92766.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
TonB-dependent receptor, plug
scnpilot_solids2_trim150_scaffold_56_curated_193
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

223154..225898
DNA (2745bp) protein (915aa)
Aminopeptidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJC5_9GAMM
Aminopeptidase N {ECO:0000313|EMBL:KGI76995.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
aminopeptidase N
scnpilot_solids2_trim150_scaffold_56_curated_194
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

226009..230172
DNA (4164bp) protein (1388aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WKK6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90305.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_56_curated_195
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

230175..231005
DNA (831bp) protein (277aa)
(protein release factor)-glutamine N5-methyltransferase (EC:2.1.1.-)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacte
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000365FBF1
scnpilot_solids2_trim150_scaffold_56_curated_196
unknown

Not on your lists

231368..232084
DNA (717bp) protein (239aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_56_curated_197
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

232162..233058
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6Y8S2_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO78428.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_56_curated_198

Not on your lists

comp(233137..234690)
DNA (1554bp) protein (518aa)
sodium:solute symporter n=1 Tax=Variovorax paradoxus RepID=UPI000380EF42
Sodium:solute symporter family {ECO:0000313|EMBL:AGU10566.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
Na+/solute symporter; K03307 solute:Na+ symporter, SSS family
scnpilot_solids2_trim150_scaffold_56_curated_199
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(234687..234875)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WIY3_BURSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG18428.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
scnpilot_solids2_trim150_scaffold_56_curated_200
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

235022..235393
DNA (372bp) protein (124aa)
diacylglycerol kinase (EC:2.7.1.107)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036CBE3A
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:KGI77260.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_solids2_trim150_scaffold_56_curated_201
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

235460..236131
DNA (672bp) protein (224aa)
LemA family protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C8376
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_56_curated_202
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

236340..237215
DNA (876bp) protein (292aa)
Beta-propeller domain-containing protein, methanol dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYZ7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45238.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
beta-propeller domain-containing protein, methanol dehydrogenase
scnpilot_solids2_trim150_scaffold_56_curated_203
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

237215..237706
DNA (492bp) protein (164aa)
Putative membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBS7_9GAMM
Membrane protein {ECO:0000313|EMBL:GAN45237.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_56_curated_204
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(237711..239813)
DNA (2103bp) protein (701aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000360E9CB
hypothetical protein; K06888
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_solids2_trim150_scaffold_56_curated_205
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(239886..241883)
DNA (1998bp) protein (666aa)
Prolyl oligopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYZ4_9GAMM
dipeptidyl aminopeptidase/acylaminoacyl peptidase
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:AGG88061.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_56_curated_206
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

242013..243218
DNA (1206bp) protein (402aa)
hypothetical protein; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
SAM-dependent methyltransferase n=1 Tax=mine drainage metagenome RepID=T1BW77_9ZZZZ
SAM-dependent methyltransferase {ECO:0000313|EMBL:GAN45235.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_solids2_trim150_scaffold_56_curated_207
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

243343..244248
DNA (906bp) protein (302aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037CC980
scnpilot_solids2_trim150_scaffold_56_curated_208
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

244341..245420
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B775_METTP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK14549.1}; TaxID=349307 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta thermophila (strain DSM 6194 / PT) (Methanothrix; thermophila (strain DSM 6194 / PT)).;"
scnpilot_solids2_trim150_scaffold_56_curated_209
unknown

Not on your lists

comp(245388..246392)
DNA (1005bp) protein (335aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_56_curated_210

Not on your lists

comp(246386..247681)
DNA (1296bp) protein (432aa)
Marine sediment metagenome DNA, contig: S06H3_S21344 {ECO:0000313|EMBL:GAI48295.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying items 181-210 of 315 in total

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