ggKbase home page

GWA2_Bacteroidetes_42_15_gwa2_scaffold_1559_11

Organism: Bacteroidetes bacterium GWA2_42_15

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 MC: 1 ASCG 13 / 38 MC: 1
Location: comp(15750..16304)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily id=1879412 bin=GWE2_Bacteroidetes_42_39 species=Algoriphagus machipongonensis genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good + similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 185.0
  • Bit_score: 363
  • Evalue 1.80e-97
RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWE2_Bacteroidetes_42_39_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 184.0
  • Bit_score: 363
  • Evalue 2.50e-97
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 33.5
  • Coverage: 182.0
  • Bit_score: 118
  • Evalue 1.70e-24

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

GWE2_Bacteroidetes_42_39_curated → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 555
ATGACGAAACAAATTGACTGGAGGAAGATACGCGAAGGAGATAAGTTGGTTTTCGATAAAATGTTCGATTACTATTATTTGCCTTTGTGTTCCTTTGTTTCGTCCTATGTCAAAGACAGGCAGGCAACCGAAGACATTGTTATCGATTGTTTTGCGAAAATCTGGGAAGAACGCAGCTCATTTGAGATCAGATCATCGCTGCAAAATTATTTGGTTACGGTTGTTAAAAACTCAGCCATAAGCTATTTGCGAAAGGACCAATCGCAATGGTCCGGGCTGGAGAAAATATCGGATTCAATGCCCGATGAAATGCAGAATTTAGCAGAAGATGCAGGAATCCTGAATAAATTGTATGAAGCCATCAATAAATTACCTGAACAAAGGCGCAGGATACTGAAGATGGCAGCTTTCGAAGAAAAATCGTATGCCGAAATTGCTGAAGAACTTCAACTTTCGGTGAATACCGTAAAAACACAAATGGCGCGGGCCTATAAATTTCTGAGATCGGAACTGGAAGTAAGCCAGAAGACCATCCGGTTTCTGCTGTTTATGTAA
PROTEIN sequence
Length: 185
MTKQIDWRKIREGDKLVFDKMFDYYYLPLCSFVSSYVKDRQATEDIVIDCFAKIWEERSSFEIRSSLQNYLVTVVKNSAISYLRKDQSQWSGLEKISDSMPDEMQNLAEDAGILNKLYEAINKLPEQRRRILKMAAFEEKSYAEIAEELQLSVNTVKTQMARAYKFLRSELEVSQKTIRFLLFM*