ggKbase home page

RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_71_110

Organism: Bacteroidetes bacterium RIFOXYC2_FULL_40_12

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 14 / 38
Location: comp(136377..136895)

Top 3 Functional Annotations

Value Algorithm Source
putative RNA polymerase sigma factor id=2047356 bin=GWD2_Bacteroidetes_40_43 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 173.0
  • Bit_score: 337
  • Evalue 5.80e-90
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWE2_Bacteroidetes_40_63_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 172.0
  • Bit_score: 337
  • Evalue 8.10e-90
ECF family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 38.6
  • Coverage: 171.0
  • Bit_score: 128
  • Evalue 2.00e-27

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

GWE2_Bacteroidetes_40_63_curated → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 519
ATGAATTCCAAAGAGGAACAGTTTAAAAAGTTGATTTCCGAAAACGAGGAACGTATAAAGCGTATTTGCCGCTATTATGCTCCCGATAAGGATGAACAAAAGGACATATACCAGGAGATTCTGATAAATATCTGGAAAAGCCTGGAATCGTTTCGCGGCGATGCAAGCATCAGCACCTGGATATACCGGATTGCGGTAAATACATCGCTCAGTTTTATGGGAAAGTCGTTCAAACGGATGAAACTCCATGTCAATTCCGATACCCAGAATTTAAGTTCGCTATTGGACGAAAGCAATTATGAAGATAAACTACGGGAGGAGACACAGTTTAATCAAATCCAACTGGAATTGAACCAGTTGTCGGTTATTGACAAAGCCTTAATATCCTTGCAACTGGAAGGATTATCGATGAAAGAAATTTCCGAAATTATTGGGATTACTGAACCGAATGTAAAAGTGAAAATACACCGGATAAAAGAACAATTACGCGAAAAAATGAAAGGAGTTGATTATGAATAG
PROTEIN sequence
Length: 173
MNSKEEQFKKLISENEERIKRICRYYAPDKDEQKDIYQEILINIWKSLESFRGDASISTWIYRIAVNTSLSFMGKSFKRMKLHVNSDTQNLSSLLDESNYEDKLREETQFNQIQLELNQLSVIDKALISLQLEGLSMKEISEIIGITEPNVKVKIHRIKEQLREKMKGVDYE*