ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

A1-18-all-fractions_k255_3769452_14

Organism: A1-18-all-fractions_metab_conc_18

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(9941..13429)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RAX9_PHEZH similarity UNIREF
DB: UNIREF100
  • Identity: 85.1
  • Coverage: 1163.0
  • Bit_score: 1976
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 85.1
  • Coverage: 1163.0
  • Bit_score: 1976
  • Evalue 0.0
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 85.5
  • Coverage: 1161.0
  • Bit_score: 1983
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Phenylobacterium_69_31 → Caulobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3489
ATGGCCGATGATGCCTCGCGGCCGGTGACCGCGGCCAGCCTGCGCCGGGTGGCCGACGATCCCGGGCGACTGGACCTGATCGGCGCGCCGGAGGGCTTCGACGCCCTGGTGATGGCCGACATCGTCAAGGCGCGCAAAGGGCTCACCGTGTTCGTGGCCCGCGATGCGGCGCGGCTGTCGGCCTTCGCCGACGCCTTCGCCTTCTTCGCCCCCAACGTGGAGGTGCTGCGGTTCCCGTCCTGGGACTGCCTGCCGTACGACCGGGTGGGCCCGTCGGCGGGCGTGGCGGCCGAGCGGATGGCGACGCTGTCGCGGCTGGCGCAGGGGTTCGACGACAAGCCGCGGTTGCTGGTGGCCGCCGTGCCCGCGCTCCTGCAGCGCGTGCCGCCGCGGGCTTCGGTGAAAGGGGCGACCTATTCGGCGCGGACCGGGAATTCGGTCGAGATCGCCGACCTGGAGCGCTACTTCGCGGTCAACGGCTACCAGCGCGCCTCGACGGTGTCCGAACGCGGCGAGTTCGCCATCCGCGGCGGGGTGATCGACGTGTTCCCGCCGACCGCCGAGGAGCCGGTGCGCCTGGACCTGTTCGGCGACACCCTGGAATCCATCCGCGCCTTCGATCCCGAGACCCAGCGCTCGACCAAGCAGCTCAAGGACGTGAACCTGCTGCCGGTCTCCGAGGCCCTGCTCGACAAGGACGCGATCTCGCGCTTCCGCTCCGGTTACCTGGAGGCCTTCGGCGCGGCCGGCGACGATCCGCTCTACGAGACCGTCTCCGGAGGCGGCCGCCGCGCCGGCATGGAGCACTGGCTGCCGCTCTTCTATCCGACGATGGAGAGCCTCTTCGACTACCTGCCGAAGGACACCCTGGTCGCCCTCGACCACCTGGCGCGGGAGTCCCGCGACGAGCGGCTGGCGATGATCCGCGACGCCTTCGACGCCCGCAGCCAGACCGACCGCAAGACCCACTATCACCCGCTGGAGCCGACCCGGCTCTACCTCGACGAGGACGAGTGGGGCGAGGCGCTGAAGGTCCGCGCCAACCGCCGCTTCACGCCGTTCAACGAGGCGGAGGGCGAGCTCACCGTCGACATGGGCGCGCGGGCGGGGCGCAACTTCGCGCCGGAGCGCCAGCGCGACAGCGTCAATCTGTTCGAGGCCACGGCGCTGCACGCGCAGACCCTGGCGGCGCAGGGAAAGCGGGTGCTGTTCGCCTCCTGGTCGGAGGGGTCTTCGGACCGCCTGGGGGTGATGCTCACCGACCACGGGCTGAAAAACATCACCCTCGCGCCCTACTGGGACGCCGCGAAGGCCGCCGACCCGAAGACCCCGCAGCGGGTGGTGCTGCCGCTCGACGCCGGCTTCGAGACCGACACCCTGGCGGTGATCTCCGAGACCGACATCCTGGGCGACCGGCTGGCGCGGCCGAGGCGCCGGCGCCGCGCCACCAACTTCCTGGCGGAGGCCTCCGCGCTCACGCCCGGCGACCTGGTGGTGCACATCGACCACGGCATCGGGCGCTATGAGGGCCTGAAGACCTTGCAGGTGCAGGAGGCGCCGCACGACACCCTGGAGATCCACTACGGCGGTGAGGCCAAGCTCTACCTGCCGGTGGAGAACATCGACCTCCTGACGCGCTACGGCTCGGACAGCGAAGGCGTCCAGCTCGACCGGCTGGGCGGGGCGGCCTGGCAGGCGCGCAAGTCCAAGGCCAAGGAGCGGCTGCGGGCCATGGCCGAGGGGCTGATCCGCATCGCCGCCGAGCGGGCCACCAAGCACACCGAGGCCGTGGATCCGCCGCACGGGGTCTTCGACGAGTTCTGCGCCCGCTTCCCCTACGAGGAGACCGACGACCAGCTGGCCGCCATCGGTGACGTGCTGGAGGACCTCGGCGCCGGCAAGCCGATGGACCGGCTGATCTGCGGCGACGTGGGCTTCGGCAAGACCGAGGTGGCGTTGCGCGCAGCCTTCGTGGTGGCGATGAGCGGCAAGCAGGTGGCGGTCGTGGCGCCGACGACCCTGCTGGCGCGGCAGCACTACAAGACCTTCAAGGAGCGCTTCGAGGGCTGGCCGGTGAAGGTGAGCCGGCTCTCCCGCCTGGTCCCGCCCAAGGAGGCCGCCGAGACCCGCGAAGGGCTGAAGAACGGCGAGATCGAGATCGTGGTCGGCACCCATGCCGTGCTCGGCAAGCAGGTGGGCTTCAAGGACCTCGGCTTGGTGATCGTCGACGAGGAGCAGCACTTCGGGGTGAAGCACAAGGAAAAGCTGAAGGAGCTGCGCGCCGACGTGCACGTCCTGACGCTCACCGCCACGCCGATACCGCGCACCCTGCAGATGTCGCTGTCCGGCATCCGCGAGATGTCGATCATCGCCACCCCGCCGGTCGACCGCCTGGCCGTGCGGACCTACATCACGCCCTGGGACCCAGTCGTGGTGCGCGAGGCCCTGCTGCGGGAGAAGTACCGCGGCGGCCAGGCCTACTACGTCGCGCCGCGGATCAGCGACCTGCCGGAGCTGGAGCGGTATCTGCGCGAGCAGGTGCCGGAGGTGCATTTCGCGGTCGGCCACGGCCAGATGTCGCCGACCCAGCTGGAAGACGTCATGGGCGCCTTCTACGAGGGCAAGTTCGACGTCCTGCTGTCGACCACCATCGTCGAGAGCGGCCTCGATATCCCGACCGCCAACACCTTGATCATCCACCGCGCCGACATGTTCGGGCTCTCCCAGCTCTACCAGCTGCGCGGCCGGGTCGGCCGGGCCAAGGCGCGGGCCTATGCCTATCTGACGACGCCCTCGGAAAAGCCGATCACGCTGTCCGCGGAGAAGCGGCTGAAGGTGCTGCAGTCGCTGGACAGCTTGGGTGCGGGCTTCCAGCTGGCCAGCCACGACCTGGATATCCGGGGCGGCGGGAACCTCTTGGGCGAGGAGCAGTCGGGCCATATCCGCGAGATCGGCGTCGAGCTCTACCAGCAGATGCTGGAAGACGCGGTGAACGAGCTGAAGGAGCGCGCGGGCGCCGAGGGCCTGGTCCACGACCGCGGATGGTCGCCGCAGATCAACACCGGGGCGGCGGTGCTGATCCCCGAGGACTATGTGCGCGACCTCAATGTGCGCCTGTCGCTCTACCGTCGCCTGTCGGATGCGGAGAAGGCCGACGACCGCGAAGCCCTGGCCGCAGAGCTGATCGACCGGTTCGGGCCCTTGCCGCCGGAGGCCGGCCAGCTGCTGAAGGTGGTGGCGATCAAGGGCCTGTGCCGCGAGGCCAATGTGGCCAAGATCGACGTGGGGCCGAAGGGCGCGGTCGTCTCTTTCCGTGGCGACAGCTTCAAGAATCCGGCAGGACTCATTCAATTCGTGCAAAAAAACCAGGTCGCCTGGCGCATCCGGCCCGACAACAAGGTGGTGGTCAAGGGCGAGTGGGAGACCCCGGAGCAGCGGTTGAACGCCGCCGAGCGGGTGCTGACTGAACTGGCCAAGCTCGCCGCTTAA
PROTEIN sequence
Length: 1163
MADDASRPVTAASLRRVADDPGRLDLIGAPEGFDALVMADIVKARKGLTVFVARDAARLSAFADAFAFFAPNVEVLRFPSWDCLPYDRVGPSAGVAAERMATLSRLAQGFDDKPRLLVAAVPALLQRVPPRASVKGATYSARTGNSVEIADLERYFAVNGYQRASTVSERGEFAIRGGVIDVFPPTAEEPVRLDLFGDTLESIRAFDPETQRSTKQLKDVNLLPVSEALLDKDAISRFRSGYLEAFGAAGDDPLYETVSGGGRRAGMEHWLPLFYPTMESLFDYLPKDTLVALDHLARESRDERLAMIRDAFDARSQTDRKTHYHPLEPTRLYLDEDEWGEALKVRANRRFTPFNEAEGELTVDMGARAGRNFAPERQRDSVNLFEATALHAQTLAAQGKRVLFASWSEGSSDRLGVMLTDHGLKNITLAPYWDAAKAADPKTPQRVVLPLDAGFETDTLAVISETDILGDRLARPRRRRRATNFLAEASALTPGDLVVHIDHGIGRYEGLKTLQVQEAPHDTLEIHYGGEAKLYLPVENIDLLTRYGSDSEGVQLDRLGGAAWQARKSKAKERLRAMAEGLIRIAAERATKHTEAVDPPHGVFDEFCARFPYEETDDQLAAIGDVLEDLGAGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAVVAPTTLLARQHYKTFKERFEGWPVKVSRLSRLVPPKEAAETREGLKNGEIEIVVGTHAVLGKQVGFKDLGLVIVDEEQHFGVKHKEKLKELRADVHVLTLTATPIPRTLQMSLSGIREMSIIATPPVDRLAVRTYITPWDPVVVREALLREKYRGGQAYYVAPRISDLPELERYLREQVPEVHFAVGHGQMSPTQLEDVMGAFYEGKFDVLLSTTIVESGLDIPTANTLIIHRADMFGLSQLYQLRGRVGRAKARAYAYLTTPSEKPITLSAEKRLKVLQSLDSLGAGFQLASHDLDIRGGGNLLGEEQSGHIREIGVELYQQMLEDAVNELKERAGAEGLVHDRGWSPQINTGAAVLIPEDYVRDLNVRLSLYRRLSDAEKADDREALAAELIDRFGPLPPEAGQLLKVVAIKGLCREANVAKIDVGPKGAVVSFRGDSFKNPAGLIQFVQKNQVAWRIRPDNKVVVKGEWETPEQRLNAAERVLTELAKLAA*