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A1-18-all-fractions_k255_4269916

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_4269916_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..936
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003790A9C
Sphingomonas taxi strain 30a NODE_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29894.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
recombinase RmuC
A1-18-all-fractions_k255_4269916_2
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(963..1760)
DNA (798bp) protein (266aa)
RNA methyltransferase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K7V5_9SPHN
RNA methyltransferase {ECO:0000313|EMBL:KKC25967.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
spoU; RNA methyltransferase
A1-18-all-fractions_k255_4269916_3
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1760..2032)
DNA (273bp) protein (91aa)
Phosphotransferase system, phosphocarrier protein HPr n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V399_SPHWW
phosphotransferase system, phosphocarrier protein HPr
Phosphotransferase system, phosphocarrier protein HPr {ECO:0000313|EMBL:ABQ66765.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
A1-18-all-fractions_k255_4269916_4
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2029..2436)
DNA (408bp) protein (136aa)
PTS fructose transporter subunit IIA n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248930C
PTS system fructose subfamily transporter subunit IIA
PTS system fructose subfamily transporter subunit IIA {ECO:0000313|EMBL:AGH48318.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_4269916_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2433..3359)
DNA (927bp) protein (309aa)
UPF0042 nucleotide-binding protein G432_02950 n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SCC2_9SPHN
glmZ(sRNA)-inactivating NTPase
Nucleotide-binding protein G432_02950 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_4269916_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3356..3817)
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Alphaproteobacteria RepID=K9CUN3_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU75693.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
HPr kinase/phosphorylase
A1-18-all-fractions_k255_4269916_7
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3814..5385)
DNA (1572bp) protein (524aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
histidine kinase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248930F
integral membrane sensor signal transduction histidine kinase
A1-18-all-fractions_k255_4269916_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5354..6064)
DNA (711bp) protein (237aa)
transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B66CCE
Transcriptional regulator {ECO:0000313|EMBL:EZP72704.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
transcriptional regulator
A1-18-all-fractions_k255_4269916_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6144..7937
DNA (1794bp) protein (598aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphoenolpyruvate carboxykinase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB061
phosphoenolpyruvate carboxykinase
A1-18-all-fractions_k255_4269916_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7976..8422
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GRG8_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:GAO38665.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
A1-18-all-fractions_k255_4269916_11
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8423..9796
DNA (1374bp) protein (458aa)
Putative hydrolase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S291_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:AGH48599.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_4269916_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9945..10622
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003738D8A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT06401.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
A1-18-all-fractions_k255_4269916_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10619..11080)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WI29_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY83131.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
A1-18-all-fractions_k255_4269916_14
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11077..12036)
DNA (960bp) protein (320aa)
Membrane protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IX12_9SPHN
Membrane protein {ECO:0000313|EMBL:EQB33350.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
putative protease
A1-18-all-fractions_k255_4269916_15
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12081..12911
DNA (831bp) protein (277aa)
citE; citrate lyase beta chain (EC:4.1.3.6)
Citryl-CoA lyase n=1 Tax=Sphingobium baderi LL03 RepID=T0HVM8_9SPHN
Citryl-CoA lyase {ECO:0000313|EMBL:EQB03320.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
A1-18-all-fractions_k255_4269916_16
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12908..14428
DNA (1521bp) protein (507aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
inosine-5`-monophosphate dehydrogenase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037F3839
A1-18-all-fractions_k255_4269916_17
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14432..15607
DNA (1176bp) protein (392aa)
RNA methyltransferase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489319
Fmu (Sun) domain-containing protein
Fmu (Sun) domain protein {ECO:0000313|EMBL:ABQ66774.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
A1-18-all-fractions_k255_4269916_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15633..16130
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003637F8C
TPR repeat-containing protein
TPR repeat-containing protein {ECO:0000313|EMBL:AIT07952.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
A1-18-all-fractions_k255_4269916_19
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16127..16948)
DNA (822bp) protein (274aa)
ksgA; 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S1E7_9SPHN
A1-18-all-fractions_k255_4269916_20
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16945..17949)
DNA (1005bp) protein (335aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002EB71F2
A1-18-all-fractions_k255_4269916_21
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17978..19375)
DNA (1398bp) protein (466aa)
Chaperone SurA {ECO:0000256|SAAS:SAAS00043023}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036CA9DC
PpiC-type peptidyl-prolyl cis-trans isomerase
A1-18-all-fractions_k255_4269916_22
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19400..21742)
DNA (2343bp) protein (781aa)
Organic solvent tolerance protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RXL8_9SPHN
organic solvent tolerance protein
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_4269916_23
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21789..23258
DNA (1470bp) protein (490aa)
leucyl aminopeptidase (EC:3.4.11.1)
leucyl aminopeptidase n=1 Tax=Sphingomonas wittichii RepID=UPI0003131C9A
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
A1-18-all-fractions_k255_4269916_24
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

23272..23709
DNA (438bp) protein (146aa)
DNA polymerase III subunit chi n=1 Tax=Sphingomonas elodea RepID=UPI0002630D46
DNA polymerase III subunit chi {ECO:0000313|EMBL:KIY11895.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
DNA polymerase III chi subunit, HolC
A1-18-all-fractions_k255_4269916_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23787..24209
DNA (423bp) protein (141aa)
Nucleoside diphosphate kinase {ECO:0000313|EMBL:AKH42166.1}; EC=2.7.4.6 {ECO:0000313|EMBL:AKH42166.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
nucleoside-diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y354_9SPHN
A1-18-all-fractions_k255_4269916_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24246..25682)
DNA (1437bp) protein (479aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VZZ0_9SPHN
Cardiolipin synthetase {ECO:0000313|EMBL:GAO53774.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cardiolipin synthase
A1-18-all-fractions_k255_4269916_27
unknown

Not on your lists

comp(25686..26189)
DNA (504bp) protein (168aa)

This feature has no annotations

A1-18-all-fractions_k255_4269916_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26186..26542)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000380B63D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP71579.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
A1-18-all-fractions_k255_4269916_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26539..27099)
DNA (561bp) protein (187aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
phosphoribosylglycinamide formyltransferase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA5C2
phosphoribosylglycinamide formyltransferase
A1-18-all-fractions_k255_4269916_30
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27092..28183)
DNA (1092bp) protein (364aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
phosphoribosylaminoimidazole synthetase n=1 Tax=Sphingomonas melonis RepID=UPI00037BC38F
phosphoribosylformylglycinamidine cyclo-ligase
Displaying items 1-30 of 47 in total

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