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A2-18-all-fractions_metab_conc_122

wsip-metawrap-drep-bins_Actinobacteria_71_6
In projects: wsip-metawrap-drep-bins  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: wsip-metawrap-drep-bins_UNK

Properties

Avg. coverage: 5.78 Longest contig: 26.11 Kbp Bin length: 6.21 Mbp GC content: 71.43 %
Contigs count: 1413 Features count: 6994 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 43 / 55 MC: 10 BSCG 48 / 51 MC: 13 ASCG 11 / 38 MC: 3
Displaying items 1-50 of 1413 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
A2-18-all-fractions_k255_1047150
Class: Actinobacteria (69.57%)
23 18559 bp 70.66 5.07 84.95
A2-18-all-fractions_k255_652236
Class: Actinobacteria (90.91%)
22 21303 bp 71.28 5.89 90.24
A2-18-all-fractions_k255_277932
Class: Actinobacteria (76.19%)
21 26108 bp 71.01 3.91 93.32
A2-18-all-fractions_k255_6417882
Class: Actinobacteria (85%)
20 16204 bp 71.26 4.68 86.00
A2-18-all-fractions_k255_6096485
Class: Actinobacteria (78.95%)
19 14459 bp 71.68 5.49 90.07
A2-18-all-fractions_k255_4716697
Class: Actinobacteria (82.35%)
17 14224 bp 70.71 7.23 85.42
A2-18-all-fractions_k255_1538944
Class: Actinobacteria (68.75%)
16 15336 bp 67.87 3.86 76.58
A2-18-all-fractions_k255_6940868
Class: Actinobacteria (73.33%)
15 20927 bp 70.48 5.07 87.09
A2-18-all-fractions_k255_418412
Class: Actinobacteria (73.33%)
15 12610 bp 68.14 5.27 84.69
A2-18-all-fractions_k255_2379446
Class: Actinobacteria (80%)
15 15310 bp 72.65 6.15 92.16
A2-18-all-fractions_k255_2382821
Class: Actinobacteria (93.33%)
15 15674 bp 71.56 4.73 94.34
A2-18-all-fractions_k255_4152626
Class: Actinobacteria (92.86%)
14 16735 bp 72.69 6.06 93.76
A2-18-all-fractions_k255_4295956 14 9747 bp 71.57 3.92 81.13
A2-18-all-fractions_k255_3128658
Class: Actinobacteria (100%)
14 15600 bp 70.96 7.97 88.63
A2-18-all-fractions_k255_1889200
Class: Actinobacteria (64.29%)
14 11751 bp 71.99 3.77 88.36
A2-18-all-fractions_k255_4799342
Class: Actinobacteria (78.57%)
14 16550 bp 73.11 3.27 94.84
A2-18-all-fractions_k255_6261566
Phylum: Actinobacteria (50%)
14 9488 bp 69.97 4.46 89.23
A2-18-all-fractions_k255_6574918
Order: Streptosporangiales (64.29%)
14 12467 bp 72.74 6.41 95.27
A2-18-all-fractions_k255_1294877
Class: Actinobacteria (78.57%)
14 12345 bp 71.30 6.72 86.15
A2-18-all-fractions_k255_4377262
Class: Actinobacteria (69.23%)
13 11378 bp 70.88 5.41 90.78
A2-18-all-fractions_k255_3362385
Class: Actinobacteria (69.23%)
13 18696 bp 72.69 4.31 94.75
A2-18-all-fractions_k255_3814775
Class: Actinobacteria (76.92%)
13 15721 bp 72.83 5.69 95.62
A2-18-all-fractions_k255_2452225
Order: Streptosporangiales (61.54%)
13 16110 bp 69.53 8.49 83.76
A2-18-all-fractions_k255_2550285
Domain: Bacteria (92.31%)
13 10943 bp 69.22 3.18 85.97
A2-18-all-fractions_k255_7159899
Class: Actinobacteria (91.67%)
12 12890 bp 71.35 5.41 94.24
A2-18-all-fractions_k255_1626041
Species: Microbispora sp. ATCC PTA-5024 (50%)
12 11148 bp 70.74 5.88 87.03
A2-18-all-fractions_k255_1765911
Class: Actinobacteria (91.67%)
12 11211 bp 73.25 4.07 92.35
A2-18-all-fractions_k255_543173
Class: Actinobacteria (50%)
12 5950 bp 68.62 4.69 76.44
A2-18-all-fractions_k255_4805968
Order: Streptosporangiales (75%)
12 11954 bp 70.79 8.29 81.29
A2-18-all-fractions_k255_3712077
Order: Streptosporangiales (50%)
12 9577 bp 67.72 5.31 88.09
A2-18-all-fractions_k255_1036633
Class: Actinobacteria (91.67%)
12 10806 bp 70.88 6.89 91.28
A2-18-all-fractions_k255_5114020
Class: Actinobacteria (75%)
12 8386 bp 71.08 4.88 87.11
A2-18-all-fractions_k255_6604901
Order: Streptosporangiales (58.33%)
12 6070 bp 68.07 10.33 95.14
A2-18-all-fractions_k255_5324468
Class: Actinobacteria (75%)
12 7636 bp 72.20 5.03 90.60
A2-18-all-fractions_k255_5399107
Class: Actinobacteria (90.91%)
11 7985 bp 72.64 5.45 90.92
A2-18-all-fractions_k255_2758863
Class: Actinobacteria (100%)
11 11487 bp 73.11 4.71 94.86
A2-18-all-fractions_k255_6816929
Order: Streptosporangiales (54.55%)
11 9298 bp 71.11 6.97 86.73
A2-18-all-fractions_k255_1362200
Class: Actinobacteria (63.64%)
11 7460 bp 72.04 4.24 92.69
A2-18-all-fractions_k255_1387068
Class: Actinobacteria (63.64%)
11 12881 bp 69.68 6.58 89.78
A2-18-all-fractions_k255_4180413
Class: Actinobacteria (72.73%)
11 9181 bp 72.28 2.84 94.89
A2-18-all-fractions_k255_3066658
Class: Actinobacteria (72.73%)
11 8768 bp 73.05 4.55 95.43
A2-18-all-fractions_k255_1726809
Class: Actinobacteria (81.82%)
11 9118 bp 73.10 5.10 90.32
A2-18-all-fractions_k255_7360649
Class: Actinobacteria (72.73%)
11 11368 bp 74.38 4.61 93.97
A2-18-all-fractions_k255_248133
Genus: Streptomyces (54.55%)
11 12662 bp 70.95 5.47 97.02
A2-18-all-fractions_k255_3239251
Class: Actinobacteria (72.73%)
11 9151 bp 67.98 3.11 84.84
A2-18-all-fractions_k255_4554150
Class: Actinobacteria (81.82%)
11 9865 bp 72.61 6.11 88.37
A2-18-all-fractions_k255_4562964
Species: Thermomonospora curvata (54.55%)
11 9607 bp 70.25 6.59 86.66
A2-18-all-fractions_k255_7450328
Order: Streptosporangiales (54.55%)
11 9898 bp 70.85 5.62 83.77
A2-18-all-fractions_k255_4703393
Class: Actinobacteria (63.64%)
11 7071 bp 72.92 4.43 94.27
A2-18-all-fractions_k255_4711035
Class: Actinobacteria (90.91%)
11 13302 bp 69.00 3.42 94.77
Displaying items 1-50 of 1413 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.