ggKbase home page

A3-16-all-fractions_k255_2157551_12

Organism: A3-16-all-fractions_metab_conc_15

partial RP 23 / 55 BSCG 22 / 51 MC: 2 ASCG 8 / 38 MC: 3
Location: comp(10219..11109)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DB64_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 90.9
  • Coverage: 296.0
  • Bit_score: 529
  • Evalue 1.80e-147
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.9
  • Coverage: 296.0
  • Bit_score: 554
  • Evalue 7.20e-155
rpoH; alternative sigma factor RpoH similarity KEGG
DB: KEGG
  • Identity: 88.2
  • Coverage: 296.0
  • Bit_score: 517
  • Evalue 1.50e-144

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Massilia sp. JS1662 → Massilia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 891
ATGTCCGCACAATCCGCATTGGTTCCGGCCGGCAGTCGTACTCTGGGACTGGGTTTCAGTGGCAATCTCGGTAATATCGATGCCTATATCTCGGCAGTGAATCGCCTGCCGATGCTGTCCCACGAAGAAGAGATTTCGCTGGCTACGCGGCTGCGGGAAAAGAACGACCTGGAAGCCGCACAGAAACTCGTGATGTCGCACCTGCGCCTGGTCGTGTCGATCGCGCGCGGCTACCTGGGCTATGGCCTGCCGCACGCCGACCTGATCCAGGAAGGCAATATCGGCCTGATGAAGGCAGTCAAGCGTTTCGACCCGGACCAGGGCGTGCGCCTGGTGTCTTACGCCATGCACTGGATCAAGGCCGAGATGCACGAATACATCCTGAAGAACTGGCGTCTGGTCAAGGTCGCAACGACCAAGGCTCAGCGCAAACTGTTCTTCAACCTGCGCAGCAACAAGCAAGGTCTCGACGCCATGTCGCCGCAGCAAGTCGACGATCTGGCCAAGATGCTCGACGTCAAGCGCGAGGAAGTGGTCGAGATGGAAACGCGCCTGTCCGGCCGTGACATCGCACTGGAAGCGCCGACCGACGACGAAGACGACAAGTTCTCGCCGATCGCCTACCTGTCTTCGGACCAGCAGGAGCCGACGAAGGTCCTGGAAGGCGAGGAAAAGGTACGTCTGCAATCGGAAGGCCTGGAAACGGCCTTGTCGAAACTGGACCCGCGTTCGCGCCGCATCGTGGAAGCACGCTGGCTGGCCAACGACGACGGTTCGGGCGCCACGCTGCACACGCTGGCAGAAGAGTTCGGCGTGTCGGCCGAGCGCATCCGCCAGATCGAATCGGCCGCGCTGAAAAAGATGAAGACCGCGCTGTCGGCTTACGTATAA
PROTEIN sequence
Length: 297
MSAQSALVPAGSRTLGLGFSGNLGNIDAYISAVNRLPMLSHEEEISLATRLREKNDLEAAQKLVMSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYAMHWIKAEMHEYILKNWRLVKVATTKAQRKLFFNLRSNKQGLDAMSPQQVDDLAKMLDVKREEVVEMETRLSGRDIALEAPTDDEDDKFSPIAYLSSDQQEPTKVLEGEEKVRLQSEGLETALSKLDPRSRRIVEARWLANDDGSGATLHTLAEEFGVSAERIRQIESAALKKMKTALSAYV*