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A3-16-all-fractions_k255_1264182_7

Organism: A3-16-all-fractions_metab_conc_75

partial RP 26 / 55 MC: 6 BSCG 26 / 51 MC: 7 ASCG 10 / 38 MC: 2
Location: comp(3405..3965)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034CAB5E similarity UNIREF
DB: UNIREF100
  • Identity: 64.0
  • Coverage: 186.0
  • Bit_score: 251
  • Evalue 4.50e-64
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 63.5
  • Coverage: 181.0
  • Bit_score: 247
  • Evalue 1.80e-63
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACB34800.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.5
  • Coverage: 181.0
  • Bit_score: 247
  • Evalue 9.10e-63

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Taxonomy

Leptothrix cholodnii → Leptothrix → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 561
ATGTCGGACTTTGCACTCCAGGTCGAGACCCTTCGCCCACACTTGCTCCGCTTCGCCCGCACGCAGTTGCGCAATGACGCCTGGGCCGAAGACGCCGTCTCCGAGAGCGTGATCGCCGCCCTCGAGCGGCCGGCCGCCTTTGCCGGCCAGTCGCAGCTCAAGTCCTGGCTGATCGGCATCCTCAAGCACAAGCTGGTCGACCAGCTGCGTCGCAACACCCGCGAGGTGACCATCCTGGTGGGCGAGGACGGCGAGGACTTCGACGACGACCTGTTCCTGCCGGACGGCCATTGGCGCGAAGCCCCACAGGACTGGGGCGATCCCGACGCTGCCTGTTGCCAGAAGGAATTCTTCGACATCCTGCAGATGTGCTGCGACCACCTGCCGCCCGTGCAGGCCCGGGTCTTCATGATGCGCGAGTGGCTGGAACTCGAATCCGGCGAGATCTGCACCCAGCTGGAGATCTCGGCCGGCAATCTGTGGGTGCTGCTGCACCGCGCCCGACTGCGCCTGCGCGACTGCTTGCAGGTGCGCTGGTTCGACGGCCAATCGGCGACCTGA
PROTEIN sequence
Length: 187
MSDFALQVETLRPHLLRFARTQLRNDAWAEDAVSESVIAALERPAAFAGQSQLKSWLIGILKHKLVDQLRRNTREVTILVGEDGEDFDDDLFLPDGHWREAPQDWGDPDAACCQKEFFDILQMCCDHLPPVQARVFMMREWLELESGEICTQLEISAGNLWVLLHRARLRLRDCLQVRWFDGQSAT*