ggKbase home page

H1-16-all-fractions_k255_2920992_8

Organism: H1-16-all-fractions_metab_conc_12

megabin RP 48 / 55 MC: 11 BSCG 48 / 51 MC: 12 ASCG 13 / 38 MC: 2
Location: comp(5825..6490)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Nocardia asteroides NBRC 15531 RepID=U5E4N5_NOCAS similarity UNIREF
DB: UNIREF100
  • Identity: 54.2
  • Coverage: 203.0
  • Bit_score: 218
  • Evalue 5.00e-54
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAD81655.1}; TaxID=1110697 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia asteroides NBRC 15531.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.2
  • Coverage: 203.0
  • Bit_score: 218
  • Evalue 7.00e-54
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 52.6
  • Coverage: 211.0
  • Bit_score: 216
  • Evalue 5.40e-54

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Nocardia asteroides → Nocardia → Corynebacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 666
ATGGCCCTGGCCCGGAGCACGGTGCTCGCGGACGGCGAACTCATCGATGCAATCCAGCGTGGCGACGAGGGAGCGTTCGCTGCCATGGTCGACGCCTATAGCCCGGCACTGCTGCGGATGGCGCGGATGTTCGTCCGCGACCGTGCCGTCGCGGAGGAGGTGGTCCAGGAAACGTGGCTCGCGGTCCTACGCGGCGTCGACCGCTTCGAGCGGCGCTCGTCGCTTCGGACCTGGATCTTCCGGATCCTCATGAACACCGCCAAGACGCGCGCCCTGCGGGAGGCGCGCTCGATCCCGTTCTCGGCGGCCGTGCGAGACGACGAGCCGGTGGTCGACCCGGACCGCTTCCTCGGCCCCGACCACCGCTGGCCGGGCGGCTGGATGATGGGGCCGAGCGACTGGCCCACGCCCGAGGAAGCGCTGCTCCAGGGTGAGACGCGCGAAGTGATCCTGGGTGCGATCGACGCGCTTCCCGACGCGCAGCGCATAGTGATCACGATGCGCGACGTAGAGGGCATGGGCGCCGACGAGGTCGTCGCGGCGCTGGACATCAGCGACGGCAACCAGCGTATCCTTCTGCACCGCGCTCGCTCAAAAGTGCGCGGTGCGCTCGAGCGCCACTTCGGGGCGATCGAGCCGAACCGTGCCGCACTGGAGCTCGAATGA
PROTEIN sequence
Length: 222
MALARSTVLADGELIDAIQRGDEGAFAAMVDAYSPALLRMARMFVRDRAVAEEVVQETWLAVLRGVDRFERRSSLRTWIFRILMNTAKTRALREARSIPFSAAVRDDEPVVDPDRFLGPDHRWPGGWMMGPSDWPTPEEALLQGETREVILGAIDALPDAQRIVITMRDVEGMGADEVVAALDISDGNQRILLHRARSKVRGALERHFGAIEPNRAALELE*