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H1-18-all-fractions_k255_2686069_4

Organism: H1-18-all-fractions_conc_125

near complete RP 31 / 55 MC: 3 BSCG 47 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: comp(2448..3638)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002628CD4 similarity UNIREF
DB: UNIREF100
  • Identity: 73.0
  • Coverage: 397.0
  • Bit_score: 548
  • Evalue 5.00e-153
rpoE; RNA polymerase ECF-subfamily sigma factor similarity KEGG
DB: KEGG
  • Identity: 72.1
  • Coverage: 398.0
  • Bit_score: 536
  • Evalue 5.50e-150
RNA polymerase ECF-subfamily sigma factor {ECO:0000313|EMBL:AIJ23407.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.1
  • Coverage: 398.0
  • Bit_score: 536
  • Evalue 2.70e-149

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Taxonomy

Amycolatopsis methanolica → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1191
GTGACCCCGCCCGGACCGGCGGTCGAACGGGTCTACCGGGAGCACCGGGCCCGCATGCTGGCGGCGCTCATCCGCGTGTTCGGCGACTTCGAGCTGGCGGAGGACGTGCTGCAGGACGCGTGCGCGCTCGCGCTGCGCCGGTGGGTGGGCGGCGTGCCGGACGACCCGGTCGCCTGGCTGCTGACGGTGGCCCGCAACCGCGCGATCGACCGGCTGCGCCGCGACCGCGTCGGCCGCGAGAAGGAGGCGGCCGTGGCGCCCGACTCCCCGGACTTCCCCGAGCTCTCGGTGGAACGGCTGCTGAGCCTCGGCGACGAGCGGTTGAGCCTGATCTTCACCTGCTGCCACCCGGCGCTGGCCGAGGAGGCGCGGGTGGCGCTGACGCTGCAGGCCGTGGTCGGGATGACCGCCGGCGAGATCGCCAGGATGTTCCTGACCAGGGAGACCACGCTGGCGCAGCGGCTCGTGCGGGCCAAGCGGAAGATCCGGGACGCCGGCATCTCCCTGGCCGTACCGGCCGACCACCTCCTGCCCGAGCGCTTGTCGAGCGTGCTCGCCGTCGTGTACCTGATCTACACCCACGGCTACGGCGCGGCCGCCGCACTGCGCGAGGAGGCGGTCCGCCTGGCCAAACTGGTCGCGACGCTCATGCCGGACGAGCCGGAGGTGCTGGGCCTGGTCGCGCTGCTGCTGCTCCACGAGTCACGCGCGGACGCCCGACGAACCGCGGCGGGCGAGCTGGTGCTGCTGGCGGACCAGGACCGGTCGCGGTGGAACCACCCAAGGATCGTCGAGGCCGTCGGCGTCCTGGACCGGGCCATGCGACACGGACGCGTCGGGCCGTACCAGCTGCAGGCGATGATCGCGGTGCAGCACGTGGCGTCGCCGCCCGACTGGTCCCGGATCGCGGCGCTGTACGCGGCCCTGCTGACCATCGAGCCGTCGCCGGTCGTGGCACTGAACCACGCGGTAGCCGTCGCGGAGTCCGAGGGGCTGTCGGCGGGGCTGGCGTTGGTGGACCAGGTGGCGGGGCTCGACCGGTACCACCTGTGGCACGCCACCCGCGCGGACCTGCTGCGCCGCCTCGACCGGACGGAAGAGGCCGCGGCGGCGTACCGACGCGCGCTCGACCTGGCCACCGACCCCGCCGACCGCCACTTCCTGGCCACGCGCCTGGCTGACCTGCCATGA
PROTEIN sequence
Length: 397
VTPPGPAVERVYREHRARMLAALIRVFGDFELAEDVLQDACALALRRWVGGVPDDPVAWLLTVARNRAIDRLRRDRVGREKEAAVAPDSPDFPELSVERLLSLGDERLSLIFTCCHPALAEEARVALTLQAVVGMTAGEIARMFLTRETTLAQRLVRAKRKIRDAGISLAVPADHLLPERLSSVLAVVYLIYTHGYGAAAALREEAVRLAKLVATLMPDEPEVLGLVALLLLHESRADARRTAAGELVLLADQDRSRWNHPRIVEAVGVLDRAMRHGRVGPYQLQAMIAVQHVASPPDWSRIAALYAALLTIEPSPVVALNHAVAVAESEGLSAGLALVDQVAGLDRYHLWHATRADLLRRLDRTEEAAAAYRRALDLATDPADRHFLATRLADLP*