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H1-18-all-fractions_k255_3903064_6

Organism: H1-18-all-fractions_conc_125

near complete RP 31 / 55 MC: 3 BSCG 47 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: 3346..4533

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CIQ3_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 66.1
  • Coverage: 407.0
  • Bit_score: 518
  • Evalue 4.20e-144
RNA polymerase sigma24 factor {ECO:0000313|EMBL:ETK37888.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.7
  • Coverage: 408.0
  • Bit_score: 532
  • Evalue 3.00e-148
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 66.1
  • Coverage: 407.0
  • Bit_score: 518
  • Evalue 1.20e-144

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Taxonomy

Microbispora sp. ATCC PTA-5024 → Microbispora → Streptosporangiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1188
GTGAGTGACAGGGAGATCGAGGACCTGCTGCGCCGCCTGGCGCCGCGGGTCCTCGGTACGCTCGTCCGCCGGCACGGGCAGTTCGACGCCTGCGAGGACGCCGTGCAGGAGGCGTTGCTCGCGGCGTCGGTCCAGTGGCCGGCGGAGGGCGTGCCGAAGGAGCCGGCGGGCTGGCTGGTCACGGTCGCGGGCCGGCGGCTCACCGACCAGTGGCGCAGCGAGTCCGCCCGCCGCCAGCGCGAGCTGACCGTGTCCGTCGAGCCGGCGCCGGACGAGGACCTGACCAGGCACGTCGACGACACGCTGAAGCTGCTGTTCCTGTGCTGCCACCCCGAGCTGTCCGCCCCCTCGCAGGTGGCGCTGACGCTGCGCGCGGTGGGCGGCCTGACCACGGCGGAGATCGCGAGCGCGTTCCTGGTCCCCGAGTCGACCATGGCCCAGCGCATCAGCCGCGCGAAGCAGAAGATCAAGGGCCTCGGCTTCCCCGACAGCCCGGAGCGGCTGCCGACGGTCCTGCACGTGCTGTACCTGATCTTCAACGAGGGCTACAACGCCTCCTCCGGCGCCGACCTGCAACGCGTCGAGCTGACCGAGGAAGCAATACGACTGACCCGCGAAGTGCACACGCTCGTCCCGGAGGACGGCGAGGTCGCGGGCCTGCTGGCGTTGATGCTGCTCACGGACGCCCGCCGGGCCACCCGCACGGCCCCCGACGGCGCCCTGGTGCCGCTGGCCGAGCAGGACCGCTCCCGGTGGGACCGCGCCCGCATCGAGGAGGGCGTGGCGTTGATCACCCGGACGCTGGCGGAGTCGCCGCCTGGCCCGTACCAGCTGCAGGCCGCGATAGCCGCCATCCACGACGAGGCCCCGAGCACCGAGGAGACGGACTGGGCGCAGATCCTCATCCTGTACAAGATCATGGACCGGATGGCGCCGAACCCGATGGTGACCCTGAGCAGGGCGATCGCGACCGCCATGGTGCGGGGCCCGCGGGCAGGGCTGGACCTGCTGGCGGAACTGGACGTGGACAAGCGCGTGGCGAGCCACTACCGCCTGGACGCGGTCCGCGCCCACCTGCTCGACCTGGCCGGCGAGCACGAGCAGGCCCGCGTGCACTACCGAAGAGCGGCGAAACGGACCTTCAGCCTGCCGGAACGCGAGTACCTGATGCGGAAGGCCTCAGGGTAG
PROTEIN sequence
Length: 396
VSDREIEDLLRRLAPRVLGTLVRRHGQFDACEDAVQEALLAASVQWPAEGVPKEPAGWLVTVAGRRLTDQWRSESARRQRELTVSVEPAPDEDLTRHVDDTLKLLFLCCHPELSAPSQVALTLRAVGGLTTAEIASAFLVPESTMAQRISRAKQKIKGLGFPDSPERLPTVLHVLYLIFNEGYNASSGADLQRVELTEEAIRLTREVHTLVPEDGEVAGLLALMLLTDARRATRTAPDGALVPLAEQDRSRWDRARIEEGVALITRTLAESPPGPYQLQAAIAAIHDEAPSTEETDWAQILILYKIMDRMAPNPMVTLSRAIATAMVRGPRAGLDLLAELDVDKRVASHYRLDAVRAHLLDLAGEHEQARVHYRRAAKRTFSLPEREYLMRKASG*