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H1-18-all-fractions_k255_1870644_5

Organism: H1-18-all-fractions_conc_55

near complete RP 45 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 2
Location: 5750..9190

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.9
  • Coverage: 1145.0
  • Bit_score: 1990
  • Evalue 0.0
mfd; transcription-repair coupling factor (EC:3.6.1.-) similarity KEGG
DB: KEGG
  • Identity: 86.8
  • Coverage: 1147.0
  • Bit_score: 1978
  • Evalue 0.0
transcription-repair coupling factor n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI000375AD02 similarity UNIREF
DB: UNIREF100
  • Identity: 87.3
  • Coverage: 1146.0
  • Bit_score: 1992
  • Evalue 0.0

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Taxonomy

Janthinobacterium lividum → Janthinobacterium → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3441
ATGGCCTTCGAGCTCACCAAATCCCTGCCGAAACCGGGCGGGCGCTTCGCCCTTCCCACCCTGTATGGCTCCAGCGACGCCTGGGCGCTCGCCCGCGCCGCAAGCAGCCTCAAGCTTGAGAAACGCATGCTCACGGTGGTCGTGGCCAACGCCAGCGACGGCCAGCGCCTGCTGTCCGAACTGCCCTGGTTCGCCAAGGATTTGGCCTGCCACCTGCTGCCGGACTGGGAGACGCTACCCTACGACGCCTTTTCGCCCCACCAGGACCTGGTGTCGGAGCGTCTGGCGACCCTGCATGAAATCCGCAGCGGCCAGTGCGATGTGTTGATCGTACCGGCCACCACGGCGCTGGTGCGCCTGGCCCCGCCGTCTTTTCTGGCCGCCTACACCTTCTTTTTCAAGCAGGGCGAAAAGCTCGACGAAGCGGCGCTCAAGGCGCAACTGAGCCTGGCCGGCTACAGCCACGTGAGCCAGGTGATGTCGCCCGGCGAATACTCGGTGCGGGGCGGCCTGATCGACCTGTTCCCCATGGGCTCGCCCCTGCCCTACCGGCTCGACCTGTTCGGCGACGAAATCGAAACCATCCGCACCTTCGACGCCGACACCCAGCGCTCGCTCTATCCCGTGCGCGAAGTGCGCCTGCTGCCGGGACGTGAATTCCCCATGGACGACGCGGCCCGCACCAGCTTTCGCAGCCGCTGGCGCGAGCGCTTCGAGGGCGATCCGAGCCGCTCGGTGGTTTACAAAGACATCGGCAGCGGCATCGCCTCGGCCGGCATCGAGTACTACCTGCCCCTGTTTTTCGAGCAGACCGCGACCCTGTTCGACTACCTGCCGCAGGAAACCACCCTCGCCCTGGTGGGCGACATCGACGGCGCCATCAAGCGCTTCTGGAGCGATACCCAGTCGCGCTACCGCTTTTTGAAAGCCGACCGCGAACGCCCCATCCTGCCGCCCGATGAACTATTCCTCAGCGACGAGGCGTTTTTCACGCTGGCCAAGCCGCTGCCGCGCTGGATCATCAGCCGCGATGGCGAAGGGGAAGCATCCGCACTGTCGGCGCCGATCCCCAACATCGCCGTCAACCGCAGGCTCGACGACCCCTTGAGCAATTTGCGCAGTTTCCTGCTGGGCGACCGGGGCCGGGTCATGATCTGCGCCGAATCGAACGGCCGCCGCGAGACCTTGCAGCAGTACTTTAATGAATACGGCCTCGATCTGGCGCCGGTGGAAGGGTTTGACGGCTTTGCCGATTCCAGCGCCCGCCTGGCGCTGGGCGTAGCGCCCCTGCAGGCCGGGTTTGAACTGTTCGCGCAAGATGAGACCCTGATCTTTATCACCGAGACGGAACTGTACGCAGGCTCGGGCCGGCGGGTGGGCCACAAGAAGCAGGAAGGCGTCACCCAGGTCGAGTCAATGGTGCGCGACCTGTCGGAACTGAAGATCGGCGACCCGGTGGTGCACATCAACCACGGCATTGGCCGTTACATGGGCCTGACCAGCATGGACCTGGGCGAAGGCGAGACCGAGTTCCTGCATCTGGAATATGCCAAGGACACCAAGCTGTATGTGCCGGTCTCGCAACTGCACGTCATTTCAAGGTATTCGGGTGCCTCGCCCGAAGACGCGCCCCTGCATTCGCTGGGCTCCGGCCAGTGGGAAAAGGCCAAGCGCAAGGCGGCCGAGCAGGTGCGCGACACCGCGGCAGAACTACTGAACCTGTATGCGCGGCGCGCGCTGCGCCAGGGTCACGCGTTTGAATACTCCAGCCACGATTACCAGAACTTCGCCGACAGTTTCGGTTTTGAAGAAACGCCCGACCAGGCCGAGGCGATCACCAACGTCATCAAGGATATGACAAGCGGTAAGCCGATGGACCGCCTGGTATGCGGCGACGTCGGCTTCGGCAAGACCGAAGTGGCTTTACGGGCGGCGTTCATTGCCGTCATGGGCGGCAAGCAGGTGGCGATTCTCGCGCCGACCACCCTGCTGGCCGAGCAGCACGCACAAACCTTCGCCGACCGCTTCGCGGACTGGCCCGTGCGCATCGCCGAGTTGTCGCGTTTTCGCACCGGTAAAGAAATCAACAACGCCATCAAGGGCATGGCCGACGGCACACTGGACATCGTGATCGGCACACACAAGCTCCTGTCGCCGGATGTGCAGTTTACCCGCTTGGGACTGGTCATCATCGACGAGGAACACCGGTTTGGTGTTAGGCAAAAAGAGGCATTGAAGGCGCTGCGGGCCGAAGTCGATGTATTGACCCTGACCGCGACGCCCATCCCCCGTACCCTGGGCATGGCGCTGGAAGGCCTGCGTGATTTTTCCATCATCGCCACCGCGCCGCAGAAGCGCCTGGCCATCAAGACCTTTGTGCGCAGCGAGGACGGCTCCGTCATCCGCGAGGCCTGCCTGCGCGAACTCAAACGGGGCGGCCAGATCTATTTTCTGCACAACGAGGTCGAGACCATCGGCAACCGCATGGCGATGCTGACCGAACTGCTGCCGGAAGCGCGCATCGGCGTGGCCCATGGCCAGATGCACGAGCGCGATCTGGAAAAAGTCATGCGCGATTTCGTCGCCCAGCGCTACAACATCCTCTTGTGCACCACCATCATCGAGACCGGCATCGACGTGCCGACCGCGAACACCATCATCATGCACAGGGCGGACAAATTCGGGCTGGCGCAGTTGCACCAGTTGCGCGGCCGGGTAGGACGTTCGCACCACCAGGCCTACGCCTACTTGCTGGTGCACGATGTCATGAGCCTGTCGAAACAGGCGCAAAGGCGGCTCGACGCCATCCAGCAGATGGAAGAACTGGGCTCGGGCTTTTTCCTCGCCATGCACGACCTGGAAATCCGCGGCGCCGGCGAGGTGCTGGGCGAAAACCAATCGGGCGAAATGCTCGAAGTGGGTTTTCAGCTGTACTCCGACATGCTGCAGGAGGCGGTGCGCTCTCTCAAGGCTGGCAAGGAGCCCGATCTGGCGGCACCGCTGGCCACGACCACCGAAATCAATCTGCACGTACCGGCGCTGCTGCCGGTGGATTTCTGCGGCGACGTCAACGAACGCTTGTCCATTTATAAGCGGCTGGCCAATTGCAGCAAGGCCGAGCAGGTCGACGACATGCAGGAAGAACTGATCGACCGATTCGGCAAACTGCCGGACGCCGTGAAAGCGCTGATCGAGACCCACCGCCTGCGCATCGCCGCCAAGGCGGTCGGCATCGTCAAGATCGACGCCCACGGCGAGGCGGCCAATCTGCAGTTCATGGTCAACCCGCCCATTGACGCGCTGCGCATCATCACCCTGATCCAGAAAAACCGCCACATCAAGCTGGCCGGTCAGGACAAGCTGAAGATCACGGCCAGCATGCCTGACCTGGCTGCGCGCGTCACCCAGGTCAAGCAAACCATCAAGCAGCTGCTTGCATAA
PROTEIN sequence
Length: 1147
MAFELTKSLPKPGGRFALPTLYGSSDAWALARAASSLKLEKRMLTVVVANASDGQRLLSELPWFAKDLACHLLPDWETLPYDAFSPHQDLVSERLATLHEIRSGQCDVLIVPATTALVRLAPPSFLAAYTFFFKQGEKLDEAALKAQLSLAGYSHVSQVMSPGEYSVRGGLIDLFPMGSPLPYRLDLFGDEIETIRTFDADTQRSLYPVREVRLLPGREFPMDDAARTSFRSRWRERFEGDPSRSVVYKDIGSGIASAGIEYYLPLFFEQTATLFDYLPQETTLALVGDIDGAIKRFWSDTQSRYRFLKADRERPILPPDELFLSDEAFFTLAKPLPRWIISRDGEGEASALSAPIPNIAVNRRLDDPLSNLRSFLLGDRGRVMICAESNGRRETLQQYFNEYGLDLAPVEGFDGFADSSARLALGVAPLQAGFELFAQDETLIFITETELYAGSGRRVGHKKQEGVTQVESMVRDLSELKIGDPVVHINHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGASPEDAPLHSLGSGQWEKAKRKAAEQVRDTAAELLNLYARRALRQGHAFEYSSHDYQNFADSFGFEETPDQAEAITNVIKDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILAPTTLLAEQHAQTFADRFADWPVRIAELSRFRTGKEINNAIKGMADGTLDIVIGTHKLLSPDVQFTRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIATAPQKRLAIKTFVRSEDGSVIREACLRELKRGGQIYFLHNEVETIGNRMAMLTELLPEARIGVAHGQMHERDLEKVMRDFVAQRYNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDVMSLSKQAQRRLDAIQQMEELGSGFFLAMHDLEIRGAGEVLGENQSGEMLEVGFQLYSDMLQEAVRSLKAGKEPDLAAPLATTTEINLHVPALLPVDFCGDVNERLSIYKRLANCSKAEQVDDMQEELIDRFGKLPDAVKALIETHRLRIAAKAVGIVKIDAHGEAANLQFMVNPPIDALRIITLIQKNRHIKLAGQDKLKITASMPDLAARVTQVKQTIKQLLA*