ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

H1-18-all-fractions_k255_3295826_1

Organism: H1-18-all-fractions_conc_55

near complete RP 45 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 2
Location: comp(1..765)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoS n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PG98_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 81.8
  • Coverage: 236.0
  • Bit_score: 370
  • Evalue 1.20e-99
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.0
  • Coverage: 252.0
  • Bit_score: 380
  • Evalue 1.60e-102
rpoS; RNA polymerase sigma factor RpoS similarity KEGG
DB: KEGG
  • Identity: 76.8
  • Coverage: 250.0
  • Bit_score: 366
  • Evalue 4.90e-99

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Janthinobacterium lividum → Janthinobacterium → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 765
ATGACACTACCGACTCAGCAGCGCGACAAGGACAGCGGCCCGGACGATGAAGGCTTCGATCCGGCATTGATCGACGGCGCCGCGCTCGATAATGAGATCGATAACGAAGTCGATGACGAGCTCATCGACGGTGACGATACCGATCGGGGCGATGCCGTCGCCGCCGCTCCCGAAGTCGTCGTCGCCGGCGTCGACGAGCTCAAGAAGGTGCTCCAGGCCGAGCTTTCCACCGACACCACCCAGCATTACCTGAACCAGATCGGCACCCGGCCCCTGCTGTCGGCCGCCGATGAAGTGCGCATCGCCACCCTGGCCAAGAGCGGCGATTTCCACGCCCGCCAGATGATGATCGAGCACAATCTGCGGCTGGTCGTCTCGATCGCCAAACACTACATCAACCGCGGCGTGGTCCTGCTCGACATGATCGAAGAGGGTAACATCGGCCTGATGCGGGCGATCGACAAGTTCGAGCCGGAACGGGGTTTTCGCTTCAGCACTTACGCCACCTGGTGGATCCGCCAGAGCATCGAACGGGCCATCATGAACCAGGCCCGCACCGTGCGCCTGCCGGTGCACATGGTGCGCGAACTGAATCAGGTGCTGCGCGCCAAATACCACCTCGAAGCCCAGCACCACGACGGCAAGGACGCCACCGTCGAAGACATCGCCCACCTGGTCGGCCGGCCCGTCGAAGAAGTGCAGGACATCCTGGCCCTGTCCGAGCACGCCACCTCGCTCGACGCGCCGCTCGACAATGATCCCCAG
PROTEIN sequence
Length: 255
MTLPTQQRDKDSGPDDEGFDPALIDGAALDNEIDNEVDDELIDGDDTDRGDAVAAAPEVVVAGVDELKKVLQAELSTDTTQHYLNQIGTRPLLSAADEVRIATLAKSGDFHARQMMIEHNLRLVVSIAKHYINRGVVLLDMIEEGNIGLMRAIDKFEPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHMVRELNQVLRAKYHLEAQHHDGKDATVEDIAHLVGRPVEEVQDILALSEHATSLDAPLDNDPQ