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H1-18-all-fractions_k255_7668841_5

Organism: H1-18-all-fractions_conc_55

near complete RP 45 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 2
Location: 3837..4523

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-70 n=1 Tax=Variovorax paradoxus RepID=UPI00036C7BA1 similarity UNIREF
DB: UNIREF100
  • Identity: 59.6
  • Coverage: 235.0
  • Bit_score: 282
  • Evalue 3.80e-73
RNA polymerase subunit sigma-70 {ECO:0000313|EMBL:KFE52800.1}; TaxID=317 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.7
  • Coverage: 226.0
  • Bit_score: 273
  • Evalue 1.90e-70
RNA polymerase sigma-70 family protein similarity KEGG
DB: KEGG
  • Identity: 59.1
  • Coverage: 230.0
  • Bit_score: 270
  • Evalue 4.20e-70

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Taxonomy

Pseudomonas syringae → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 687
ATGAACGATGATCTCTATGTGCTGGCGGGCGAATATGTGCTGGGGATCTTGTCGGCTTCCACCAGCGCGGAGGTCGAGCGCCGCCTCTTGAACGAGCCGGCCTTGCGTCTGGCAGTGCAGCAGTGGGAGGCGGATTTGCTGCCGCTGGCGAGCATCGTGCCGCCCGTGTCGCCGTCGCCCCAATTGTGGACGCGGATTGCACGCAGCGCGACTGCGCCCGTCGTCACGGCGCCGCGCCGCCGCTGGTGGGATAGCCTGGGCTTGTGGCGGACCCTGACGGCCGGTTCCATGCTGGCCTGCGCCGTGCTGGCGGTGAACCTGGCCAGCCGCGCGGTGTTGCCCCCCGCGCCGCAGTACATGGTGGTGCTGGTGGCGCCGCAGGACAAGGCGCCGGGCTATGTGGTGCAGGCCGATGCGAAGCACCAGGTGCAACTGACGCCGCTGGCCACCGCCGCCATCCCTGGCGACAAATCGCTGCAGTTCTGGACCAAGGCCGAGGGCTGGAAGGGGCCCGTGTCACTGGGTCTCGTCAAGCCTGGGCAGACCATCACCATCCCGCTCGATGCGCTGCCCAATGTGCAGCCGAATCAGTTGTTTGAGCTGACGCTCGAGCCGGTGAATGGGTCGCCGCTCAACAAGCCGACCGGGCCGGTGCAGTTTATTGGGCGGGCCGTGAAGGTGATGTAA
PROTEIN sequence
Length: 229
MNDDLYVLAGEYVLGILSASTSAEVERRLLNEPALRLAVQQWEADLLPLASIVPPVSPSPQLWTRIARSATAPVVTAPRRRWWDSLGLWRTLTAGSMLACAVLAVNLASRAVLPPAPQYMVVLVAPQDKAPGYVVQADAKHQVQLTPLATAAIPGDKSLQFWTKAEGWKGPVSLGLVKPGQTITIPLDALPNVQPNQLFELTLEPVNGSPLNKPTGPVQFIGRAVKVM*