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H1-18-all-fractions_k255_50127_2

Organism: H1-18-all-fractions_conc_96

near complete RP 31 / 55 BSCG 49 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: comp(266..772)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily n=3 Tax=Amycolatopsis mediterranei RepID=D8HVN0_AMYMU similarity UNIREF
DB: UNIREF100
  • Identity: 58.4
  • Coverage: 161.0
  • Bit_score: 191
  • Evalue 3.80e-46
ECF subfamily RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 58.4
  • Coverage: 161.0
  • Bit_score: 191
  • Evalue 1.10e-46
RNA polymerase sigma-70 factor, ECF subfamily protein {ECO:0000313|EMBL:AEK44840.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.4
  • Coverage: 161.0
  • Bit_score: 191
  • Evalue 5.40e-46

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Taxonomy

Amycolatopsis mediterranei → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 507
ATGGTCGTGGACTTCGACGAGTTCCTGCGCGAGCAACTCGGGCCGCTGGTGCGCTTCGCGGGCGTGCTCACCGCCGATTCGCACCTGGCTCAGGACCTGACCCAGGACGCGCTGGTGCGGGCGCACGCCAGGTGGACGCGGATCGGCCGGCTGGACCGGCCGGACCTCTACCTCCGGCGCATGATCACCAACGGGTACCTGTCCTGGCGCCGGCTGGCCTCGGTGCGCACCACCCGTCCGGTCGCCGACGCGGCCCAGCTCAGCCGGGTCACCGTGCCGGACCCGGCCGTGCGGCTCGCCGATGCGGACCTGGTGGGCTCGTTGCTGGCCACCCTCAGCCGCAAACAGCGGGCGGTGCTGGTGCTCCGGTTCTACGAGGGACGCACCGACGAGGAGATCGCGGCCATCCTCGGCTGCGCTCCCGGCACCGTGCGCAGCCACGTCTCCCGCGCGCTCGCCGGCCTGCGCGAGCGGGTCGGCGACCAACGACCGATGGAGGTTTCATGA
PROTEIN sequence
Length: 169
MVVDFDEFLREQLGPLVRFAGVLTADSHLAQDLTQDALVRAHARWTRIGRLDRPDLYLRRMITNGYLSWRRLASVRTTRPVADAAQLSRVTVPDPAVRLADADLVGSLLATLSRKQRAVLVLRFYEGRTDEEIAAILGCAPGTVRSHVSRALAGLRERVGDQRPMEVS*