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H2-16-all-fractions_k255_5968711_23

Organism: H2-16-all-fractions_metab_conc_41

partial RP 36 / 55 BSCG 38 / 51 MC: 4 ASCG 10 / 38 MC: 4
Location: comp(23303..24133)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=3 Tax=Amycolatopsis mediterranei RepID=D8HVP8_AMYMU similarity UNIREF
DB: UNIREF100
  • Identity: 45.8
  • Coverage: 238.0
  • Bit_score: 195
  • Evalue 5.70e-47
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 45.8
  • Coverage: 238.0
  • Bit_score: 195
  • Evalue 1.60e-47
RNA polymerase sigma factor {ECO:0000313|EMBL:AEK44858.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.8
  • Coverage: 238.0
  • Bit_score: 195
  • Evalue 8.00e-47

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Taxonomy

Amycolatopsis mediterranei → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 831
ATGTCGTCCGCGGTTGTCGACCTTGGCGTCGACCCCTTCGATCCCCTGGGAACCGGAGCCTCTCCCGAAGCGCTCGAGGTCCGCCCCGAGGACGAGGTCGCCGTCCAGCGCGTCGAGCAGTGGTTCCGTGACTACGCGCAGAGCCGTGACCCGGCCCTGCGCGAGCGCATCATCCTGGCCTACCTCGGCCTGGCCGACCGGCTGGCCGAGCGCTACCGGAGCAACCGGGCCGTGCCCCTGGAGGACCTGCGCCAGGTGGCCCGGCTGGGGCTGGTCAAGGCGGTCGACCGCTACCAGCCGGAGCGGGCCAACCCGTTCATCCCCTACGCCGTGGCCACCGTGGTCGGCGAGCTCAAGCGCCACCTGCGCGACGCCAGCTGGCGGCTTCGCGTCCCCCGCGGCACCAAGGATCTGGCCCTGCGCCTGTGCCGGGCCATCGACGAGCTGCCCCAGCAGCTCGGCCACTCCCCCACCGTGCCCGAGCTGGCCGAGTACCTCGGGACCAGCATGGAGGAGGTCCTCGAGGCCATCGAGGTCGCCCAGACCCGCTCGGCCCCGTCCCTCGACCAGCCGGCCGGCGAGGACGGCGAGGCCGTGCTTGGCGACTTCGTGGTCGACAAGCGCCCCCACGAGGAGCTGGAGGACCTGCTGGTCCTGCCCGAGCTGGTCGGACGGCTGCCGGAACGGGAGCGCCGGATCGTCCTGCTGCGCTATGTCGAGGAGCTGACCCAGGACGAGATCGCGGCCCGCATGCAGATCTCCCAGATGCACGTCTCGCGCCTGCTGCGGCGGGCGATCGAGCGCATGCGCGGCCAGCTCGTCGACCCCTGA
PROTEIN sequence
Length: 277
MSSAVVDLGVDPFDPLGTGASPEALEVRPEDEVAVQRVEQWFRDYAQSRDPALRERIILAYLGLADRLAERYRSNRAVPLEDLRQVARLGLVKAVDRYQPERANPFIPYAVATVVGELKRHLRDASWRLRVPRGTKDLALRLCRAIDELPQQLGHSPTVPELAEYLGTSMEEVLEAIEVAQTRSAPSLDQPAGEDGEAVLGDFVVDKRPHEELEDLLVLPELVGRLPERERRIVLLRYVEELTQDEIAARMQISQMHVSRLLRRAIERMRGQLVDP*