ggKbase home page

H2-18-all-fractions_k255_19356_72

Organism: H2-18-all-fractions_metab_63

partial RP 28 / 55 MC: 3 BSCG 30 / 51 MC: 6 ASCG 14 / 38 MC: 4
Location: comp(94092..96362)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DFZ8_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 92.3
  • Coverage: 754.0
  • Bit_score: 1347
  • Evalue 0.0
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.9
  • Coverage: 758.0
  • Bit_score: 1361
  • Evalue 0.0
rpoD; RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 90.4
  • Coverage: 737.0
  • Bit_score: 1294
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Massilia sp. LC238 → Massilia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2271
GTGACTTCGAAAGCGCCTGTGCCAACCAAGAAACCCGAACCCAAAGTGACTGCCAAGTCCACCAGAACGTCCGCAAAGGCGGACAAAGCGCAAGACAAGGCAGAAGCCCGCACTGCGAGCACTGCGCCTGTCGTCAGCCAGACTACCGATGCCGCCGCCCTGGCCGCGATCGATACGTCGGGTTACGTGCTGCCGTCCGTCAAGGTGCCGGGGCGGCGTGGACGCAAGCCAAAAGAATTCCAGCCTGAGAACGACGAGGTCGCCGCGCTCAACGCGGTCGAACGCGCGGAGCTGAAAGCGGTCGACAAGGCCAAGGCCAAGGACCGCAAGGCCAAGGAAAAAGCCCTGCTGAAAGACGCATTCTCGTCCGATACCGAGGCGAGCGAGGAAGAGCTCGAAATCCGGCGCCAGAAGCTCAAGGCGCTGATCAAGTCGGGCAAGGAGCGCGGCTTCCTGACTTACGCCGAGATCAACGACCACCTGCCGGACAACATTGTCGATCCGGAAGCGATCGAAGGCATCATCGGCACGTTCAACGACATGGGCATTGCCGTGTACGAACACGCGCCCGATGCCGAGACGCTGCTGCTGTCCGATAACGTCGCGACCGTCACCAGCGACGACGAGGCCGAGGCCGCCGCCGAAGCGGCGCTGTCGACCGTCGACTCCGACTTTGGCCGCACCACCGATCCCGTACGCATGTACATGCGCGAGATGGGCTCGGTCGAACTGCTGACCCGCGAAGGCGAGATCGAAATCGCGAAGCGCATCGAAGACGGCCTGAAGGACATGATCCAGGCGATCTCGGCGTGCCCGGTCACGATCGCCGAAATCATCGACGCCGCGCACCGGATCGAGAAGGACGAACTGAAGATCGACGAGATCGTCGACGGCCTGGTGGACGAAACTGACGATACGTCGCCGAGCGCGGTCGCGCCGACCTCGACCGATGGCGAGGACGACGACGACGAGGACGAAGAAGAGGAAGAAGAGGAAGAGGAAGAAGAAGCCGCGGCCACCCCGGGCGCCGCCGGCTATTCGGCCGAGCAGCTCGAGGCGCTGAAGGCGTCCGCGCTCGAGAAATTCGACATGATCGCGCAGCAGTTCGACAAGATGCGCAAGGCCTACGAGCGCGAAGGCTACAACTCGCGCGGCTACGTCAAGGCGCAGGAAGCGATTTCGAACGAACTGCTGGGTATCCGCTTTACCGCCAAGGTCGTCGAGAAGCTGTGCGACACGCTGCGTGGCCAGGTCGACGAAGTGCGCCACATCGAAAAGCAGATCCTGGATGTGGCGGTGAACCGCTGCGGCATGCCGCGCGCCCACTTCATCAAGGTCTTCCCCGGCAACGAAACCAACCTCGACTGGGTCGACGGCGAAGTCAACGCCGGTCACGCGTACAGCGCCATCCTGGGCCGCAACATTCCGACCATCAAGGAGCTGCAACAGCGCCTGATCGACCTGCAGGCGCGCGTCGTGCTGCCGCTGCCGGACCTGCGCAACATCAACCGCCAGATGGCGGCCGGCGAAATGAAGGCGCGCAAGGCCAAGCGCGAAATGACCGAGGCCAACCTGCGCCTGGTGATTTCGATCGCCAAGAAGTACACCAACCGCGGCCTGCAGTTCCTCGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTGGACAAGTTCGAATACCGCCGCGGCTACAAATTCTCGACCTATGCGACGTGGTGGATTCGCCAGGCGATCACGCGTTCGATCGCCGACCAGGCACGCACCATCCGTATTCCGGTGCACATGATCGAGACCATCAACAAGATGAACCGGATCTCGCGCCAGATCTTGCAGGAAACCGGTGCGGAGCCCGATCCGGCAACGCTGGCGATCAAGATGGAAATGCCGGAAGACAAAATCCGGAAGATCATGAAGATCGCCAAAGAGCCGATTTCGATGGAGACGCCAATCGGCGACGATGACGACTCCCATCTTGGCGATTTCATCGAAGACAATAACACGCTCGCGCCATCGGACGCCGCGCTGCACGCCTCGATGCGCGGTGTGGTCAAGGATGTGCTCGATTCACTGACGCCGCGCGAAGCCAAGGTGCTGCGCATGCGCTTCGGCATCGAGATGTCGACCGACCACACGCTGGAAGAGGTCGGCAAGCAGTTCGACGTCACGCGCGAGCGTATCCGCCAGATCGAGGCGAAGGCGCTGCGCAAGCTGCGCCACCCGTCGCGCTCCGACAAGCTGAAGAGCTTCCTCGAAGGAAGCAGCTAA
PROTEIN sequence
Length: 757
VTSKAPVPTKKPEPKVTAKSTRTSAKADKAQDKAEARTASTAPVVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEASEEELEIRRQKLKALIKSGKERGFLTYAEINDHLPDNIVDPEAIEGIIGTFNDMGIAVYEHAPDAETLLLSDNVATVTSDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPVTIAEIIDAAHRIEKDELKIDEIVDGLVDETDDTSPSAVAPTSTDGEDDDDEDEEEEEEEEEEEAAATPGAAGYSAEQLEALKASALEKFDMIAQQFDKMRKAYEREGYNSRGYVKAQEAISNELLGIRFTAKVVEKLCDTLRGQVDEVRHIEKQILDVAVNRCGMPRAHFIKVFPGNETNLDWVDGEVNAGHAYSAILGRNIPTIKELQQRLIDLQARVVLPLPDLRNINRQMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPSDAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGSS*