ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

H3-16-all-fractions_k255_2781955_1

Organism: H3-16-all-fractions_metab_conc_83

partial RP 35 / 55 MC: 6 BSCG 34 / 51 MC: 7 ASCG 10 / 38 MC: 1
Location: 287..1399

Top 3 Functional Annotations

Value Algorithm Source
Putative sigma factor includes region 2 n=1 Tax=Patulibacter medicamentivorans RepID=H0E4X7_9ACTN similarity UNIREF
DB: UNIREF100
  • Identity: 58.5
  • Coverage: 378.0
  • Bit_score: 438
  • Evalue 5.20e-120
Putative sigma factor includes region 2 {ECO:0000313|EMBL:EHN11272.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.5
  • Coverage: 378.0
  • Bit_score: 438
  • Evalue 7.20e-120
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 57.2
  • Coverage: 348.0
  • Bit_score: 376
  • Evalue 6.80e-102

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Patulibacter medicamentivorans → Patulibacter → Solirubrobacterales → Thermoleophilia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1113
GTGGGTACTTCCATCACCGGCAGCGCACAGGAACGCGAACTGCTCGAGGCGGCGCGCCGCGGCAACGAGCAGGCCTTCAGCCGCCTGATCGAGCCCTACCGCGGCGAGCTGCACGCGCACTGCTACCGCATGCTCGGATCGGTCCACGACGCCGAGGACGCGCTCCAGGACGCGTCACTGCGGGCGTGGCGCGGCCTCCCGAAGTTCGAGGGCCGAAGCTCGCTGCGCTCGTGGCTCTACACGATTGCTACGAACACCTCGCTGAGCCAGATCGAGAAGCGCCCGAAGCGCGTCCTGCCGATCGACTACGGCCCCGCGGCCGACCCGCACCAGGTCCCGGGCGAGCCGGTCATCGAGTCGGTCTGGGTCGAGCCCTACCCGGACGAGCAGCTCGGACTGGGCGATGGGCTCGCCGGTCCCGATGCCGTCTACGAGATGCGCGAGAGCGTCGAGCTGGCGTTCGTCGCCGCGCTCCAGCATCTGCCGGCGAACCAGCGCGCCGTCCTGATCCTGCGCGAGGTCCTCGGCTTCTCGGCCCAGGAGACCGCCGATGCGCTCGACACGACGGTCGCGTCGGTGAACAGCGCTCTACAGCGGGCGCGCGCGGCTGTGGAGGAGCGGGTGCCCGACCAGACACAGCAGACCACGCTGCGGGCGCTGGGCGACGAGGCGCTCGGCGAGATCATGGACCGCTACATCGAGGCGTGGGAGCGCAACGACGTGGAGGCGTTCGTCGCGCTCCTGGCCGACGAGGCCACCTTCGCGATGCCGCCGCTGGCCACCTGGTACGCGGGGCGCGACGGCATCCGGACCTGGGCGGCGGCCTCGTCGATGTCGGGCGACTGGCGCTGGCGGACGGTGCGAACGCACTCGAACGGTCAGCCGGCCATCGGGTTCTACGCGTGGGACGAGAGCGCGCAGGCATACCTGCCGTTCGCGCTGAACGTACTGACCTTCGAGGGCGCCCGAGTCTCGAACGTCACGGCCTTCATCGCGCGCTCGATCGAGAGCGAGGATCCCGAGGCGTACGAGCGGTTCCCCGAGGAGCCCGCAAATCCGCGCATGGTCGAGCTCACGTTCACGCGTTTCGGGCTGCCGCCGCAGGTCGACTAG
PROTEIN sequence
Length: 371
VGTSITGSAQERELLEAARRGNEQAFSRLIEPYRGELHAHCYRMLGSVHDAEDALQDASLRAWRGLPKFEGRSSLRSWLYTIATNTSLSQIEKRPKRVLPIDYGPAADPHQVPGEPVIESVWVEPYPDEQLGLGDGLAGPDAVYEMRESVELAFVAALQHLPANQRAVLILREVLGFSAQETADALDTTVASVNSALQRARAAVEERVPDQTQQTTLRALGDEALGEIMDRYIEAWERNDVEAFVALLADEATFAMPPLATWYAGRDGIRTWAAASSMSGDWRWRTVRTHSNGQPAIGFYAWDESAQAYLPFALNVLTFEGARVSNVTAFIARSIESEDPEAYERFPEEPANPRMVELTFTRFGLPPQVD*