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S1-16-all-fractions_k255_2143626_5

Organism: S1-16-all-fractions_metab_52

near complete RP 43 / 55 MC: 4 BSCG 42 / 51 MC: 10 ASCG 14 / 38 MC: 2
Location: comp(2864..6409)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.5
  • Coverage: 1180.0
  • Bit_score: 1936
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Nocardioides sp. CF8 RepID=R7XUH2_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 82.5
  • Coverage: 1180.0
  • Bit_score: 1936
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 79.8
  • Coverage: 1208.0
  • Bit_score: 1875
  • Evalue 0.0

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Taxonomy

Nocardioides sp. CF8 → Nocardioides → Propionibacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3546
GTGTCCACTCCACTCGTCGCTGTTGCCGATCGCCTCGCCTCGGCGCCCACGCTGTCCCGCGCGCTGGCGGACGCGGCGGTGCAGAACGCCCTCGACCTGACCGGTCCGACGGCGGTCCGGCCGTTCGTGGTCCGTGGCCTGGTGGAGCGCGGTCGCACGGTGCTGGCGGTGACCGCGACGTCGCGGGAGGCCGAGGACCTGGTGGAGGAGCTTGCCGACCTCGTCGACCCCGGCACCGTGGCCTACTACCCCAGCTGGGAGACGCTGCCCCACGAGCGGCTCAGCCCCCGCAGCGACACCGTCGGCCGGCGGCTCGCCGTCCTGCGCCGGCTACGCCACCCCGGTACCGACGCCGCCAACGGCCCGCTCCAGGTGGTCGTCGCCCCGATCCGCAGCCTGCTCCAGCCGCAGGTGCCCGGCCTGGCCGACATCGAGCCGGTCGAGCTGGCGCCGGGCGACTCCCGCCCGATGGAGGACGTCGTCCGCGGCCTGTCGGAGGCGGCGTACTCCCGCGTCGACATGGTCGAGCGCCGCGGCGAGTTCGCGGTCCGCGGCGGCATCGTCGACGTGTTCCCGCCGACCGAGGAGCACCCGCTGCGGGTGGAGTTCTGGGGCGACGACGTCGAGGAGATCCGGTCCTTCTCCGTCGCCGACCAGCGCACCCTCGAGACCGTCCAGCGGCTGTGGGCGCCGCCGTGCCGCGAGCTGCTCCTCACCGAGGACGTACGACGACGCGCCGCCGAGCTCGGCCGCGCACACCCCCAGCTGCTCGAGCTCACCGACAAGATGGCCGCCGGCATCGCGGTGGAGGGCATGGAGTCCCTCGCGCCGGTGCTGGTCGACACGATGGAGCTCCTCGTCGACCTGATGCCGGCGGACACGACGGTGCTGGTGCTCGACCCGGAGCGGGCGCGCACCCGCGCCCACGACCTGGTCGCGACCAGCGAGGAGTTCCTCGGCGCGTCGTGGGCCGCGGCCGCCGGCGGCGGCACCGCTCCGATCGACCTGGGCGCGGCCTCCTACCGCGAGATCGCGGACGTCCGGCTGCAGGCCCTCGGCCGTGGCCACGCCTGGTGGACCGTGAGCCCCTTCGGGATCGAAGCGGACTCACTCACCTTGCCCACCCACGCCGCCGAGGCCTACCGCGGCGACCTCGAGCAAGCGGTTGCGGACATCCGGGGCTGGGTGGACGACGGCGTCGAGGTGGTCGTGGTGCACGCCGGCCACGGTCCCGCCGAGCGGTTCGTCGAGCTCCTCGGCGAGAACGACATCGCCGCGCGGCTCGTCGAGGAGGGCGGGACCGCCGGCTCCCATGTCGTGACGGTGACGTGCGGACACCTCGTGCACGGTCTCGTCGACGACCAGGCGAAGGTCGCGATCGTCACCGGCGACGACCTGGCGGGACAGAAGACCTCGACGCGCGACATGCGTCGGATGCCGACGCGCCGCAAGAAGCAGATCGACCCGCTCGAGCTGAAGGCCGGCGACTACGTCGTCCACGAGCAGCACGGCGTGGGGCGGTTCGTGGAGATGAAGCAGCGCGAGATCGGCGGGGCGGTCCGGGAGTACCTCGTCCTGGAGTACGGCGCGAGCAAGCGCGGCGGGCCCAACGACATGCTCTACGTCCCGGCCGACACCCTCGACCAGGTCACCCGCTACGTCGGTGGCGAGAACCCCAGCCTCGACCGGCTCGGCGGCGGTGACTGGACCAAGCGCAAGAACAAGGCCCGTCGTGCGGTCCGCGAGATCGCGGCCGAGCTGATCAAGCTGTACGCAGCGCGGCAGGCCACCAAGGGCCACGCCTACGGCCCGGACACCCCGTGGCAGCGCGAGCTCGAGGACGCCTTCCCGTTCACCGAGACCGTCGACCAGCTGACGACCGTCGACGAGGTCAAGGCCGACATGCGGCAGGTGGTCCCGATGGACCGGCTGGTGTGCGGCGACGTCGGCTACGGCAAGACCGAGATCGCGGTGCGGGCGGCGTTCAAGGCGGTGCAGGACGGCAAGCAGGTCGCCGTGCTCGTGCCGACGACCCTGCTCGTCACCCAGCACCTGTCGACCTTCTCCGAGCGCATGTCCGGGTTCCCGGTCGTGATCAAGGGGCTCTCGCGCTTCCAGACCGACAAGGAGGCCAAGGAGGTCATCGCCGGCCTGGGCGACGGGTCCGTCGACATCGTCGTCGGCACCCACCGGCTGCTGAACCCCGACATCAAGGTCAAGGACCTCGGCCTGATCATCGTCGACGAGGAGCAGCGCTTCGGGGTGGAGCACAAGGAGCAGATGAAGCGGATGCGCACCTCCGTCGACGTGCTGTCGATGAGCGCGACGCCGATCCCGCGCACCCTCGAGATGGCGGTGACCGGCATCCGGGAGATGTCGACGATCACCACGCCGCCCGAGGAGCGGCACCCGGTCCTCACCTACGTCGGCGCCTACGAGGACCGCCAGGTCGTGGCCGCGGTCCGACGCGAGCTGCTCCGCGAGGGCCAGGTGTTCTACATCCACAACCGCGTGCAGTCGATCGAGAAGGCGGCGGCCCGGATCCGCGAGCTGGTGCCGGAGGCCCGGGTGGCCACGGCCCACGGCCAGATGGGCGAGCACGCGCTCGAGCAGGTCATGCTCGACTTCTGGGAGAAGCGCTTCGACGTGCTGGTCTGCACGACGATCGTGGAGAGCGGCCTCGACGTGTCCAACGCCAACACGATGATCATCGAGCGCTCCGACACCCTCGGCCTCTCCCAGCTCCACCAGCTCCGTGGACGCGTCGGCCGGTCCCGCGAGCGCGCCTACGCCTACTTCCTCTATCCCGCGGAGAAGCCGCTCACCGAGACCGCGCACGAACGGCTGGCGACCCTCGCCCAGCACTCCGACCTCGGCGGCGGCATGGCGATCGCCATGAAGGACCTCGAGATCCGCGGCGCCGGCAACCTGCTCGGGGGCGAGCAGTCCGGCCACATCGCCGACGTCGGCTTCGACCTCTACGTCCGCCTCGTGGGCGAGGCGGTCGCCGAGTTCAAGGGCGGTGGCGAGGAGGAGGTGGCTGCCGAGGTGCGCATCGAGCTCCCCGTCGACGCCCACCTGCCCCACGACTACATCCCCAGCGAGCGGCTGCGCCTGGAGATCTACAAGCGGCTGGCCGAGGTGCGCACCGACGCCGACGTCGACGAGGTCCGCGCCGAGCTGGTCGACCGCTACGGCACCCCTCCCGAGGCCGTGGAGTCGCTGCTGTTCGTGGCCCGCTTCCGCGCCCGGTGCCGCCAGGCCGGGGTCCGCGAGGTCACGCTGGCCGGCAAGTACGTCCGGTTCGCGCCGGTCGACCTCCCCGACTCCCGCGTCGTACGGCTGCAGCGGCTGCATCCGCGCAGCGTCGTCAAGGCGCCCGTCAGCACGATCCTCGTGCCGCGCCCGCAGACGGCGGCGGTCGCCGGGCGTCCGGTGGCGGGCATCGCCCTGCTTGAATGGGCCCGCGGAGTGATCGACGACGTGATCGCCCCCAGCCCGACCGCCCCGGGCAGCCCCCCGGTCCCACCAAGGAGTGACTCGTGA
PROTEIN sequence
Length: 1182
VSTPLVAVADRLASAPTLSRALADAAVQNALDLTGPTAVRPFVVRGLVERGRTVLAVTATSREAEDLVEELADLVDPGTVAYYPSWETLPHERLSPRSDTVGRRLAVLRRLRHPGTDAANGPLQVVVAPIRSLLQPQVPGLADIEPVELAPGDSRPMEDVVRGLSEAAYSRVDMVERRGEFAVRGGIVDVFPPTEEHPLRVEFWGDDVEEIRSFSVADQRTLETVQRLWAPPCRELLLTEDVRRRAAELGRAHPQLLELTDKMAAGIAVEGMESLAPVLVDTMELLVDLMPADTTVLVLDPERARTRAHDLVATSEEFLGASWAAAAGGGTAPIDLGAASYREIADVRLQALGRGHAWWTVSPFGIEADSLTLPTHAAEAYRGDLEQAVADIRGWVDDGVEVVVVHAGHGPAERFVELLGENDIAARLVEEGGTAGSHVVTVTCGHLVHGLVDDQAKVAIVTGDDLAGQKTSTRDMRRMPTRRKKQIDPLELKAGDYVVHEQHGVGRFVEMKQREIGGAVREYLVLEYGASKRGGPNDMLYVPADTLDQVTRYVGGENPSLDRLGGGDWTKRKNKARRAVREIAAELIKLYAARQATKGHAYGPDTPWQRELEDAFPFTETVDQLTTVDEVKADMRQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQHLSTFSERMSGFPVVIKGLSRFQTDKEAKEVIAGLGDGSVDIVVGTHRLLNPDIKVKDLGLIIVDEEQRFGVEHKEQMKRMRTSVDVLSMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTYVGAYEDRQVVAAVRRELLREGQVFYIHNRVQSIEKAAARIRELVPEARVATAHGQMGEHALEQVMLDFWEKRFDVLVCTTIVESGLDVSNANTMIIERSDTLGLSQLHQLRGRVGRSRERAYAYFLYPAEKPLTETAHERLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVAEFKGGGEEEVAAEVRIELPVDAHLPHDYIPSERLRLEIYKRLAEVRTDADVDEVRAELVDRYGTPPEAVESLLFVARFRARCRQAGVREVTLAGKYVRFAPVDLPDSRVVRLQRLHPRSVVKAPVSTILVPRPQTAAVAGRPVAGIALLEWARGVIDDVIAPSPTAPGSPPVPPRSDS*