ggKbase | organisms

Consensus taxonomy: Actinoplanes → Micromonosporales → Actinobacteria → Actinobacteria → Bacteria

Metagenomic Context

Parent: wsip-metawrap-drep-bins_UNK

Properties

Avg. coverage: 4.58 Longest contig: 38.92 Kbp Bin length: 7.11 Mbp GC content: 72.32 %

Contigs count: 1306 Features count: 7764 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 27 / 55 MC: 2 BSCG 29 / 51 MC: 6 ASCG 13 / 38 MC: 8

Displaying items 1151-1200 of 1306 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
S2-18-all-fractions_k255_2561107 Species: Actinoplanes friuliensis (50%)	2	2375 bp	70.86	2.72	95.87
S2-18-all-fractions_k255_3666584 Species: Nocardioides sp. JS614 (50%)	2	1727 bp	68.27	9.64	99.71
S2-18-all-fractions_k255_5559066 Species: Actinoplanes friuliensis (50%)	2	1653 bp	71.32	2.09	92.01
S2-18-all-fractions_k255_3682734 Species: Actinoplanes missouriensis (50%)	2	1568 bp	72.64	0.96	89.73
S2-18-all-fractions_k255_3687234 Species: Actinoplanes friuliensis (50%)	2	4476 bp	72.14	3.72	88.14
S2-18-all-fractions_k255_1524302 Species: Actinoplanes friuliensis (50%)	2	1853 bp	74.42	2.02	93.42
S2-18-all-fractions_k255_3693823 Species: Actinoplanes sp. N902-109 (50%)	2	1742 bp	72.85	1.98	95.24
S2-18-all-fractions_k255_4552318 Species: Actinoplanes friuliensis (50%)	2	1796 bp	74.44	1.17	90.37
S2-18-all-fractions_k255_3698740 Species: Actinoplanes missouriensis (50%)	2	1715 bp	74.29	2.45	96.04
S2-18-all-fractions_k255_1549526 Species: Actinoplanes missouriensis (50%)	2	2270 bp	69.82	9.12	96.87
S2-18-all-fractions_k255_5601939 Species: Actinoplanes sp. N902-109 (50%)	2	1933 bp	71.13	5.12	97.93
S2-18-all-fractions_k255_5602214 Species: Blastococcus saxobsidens (100%)	2	2176 bp	72.61	5.93	86.86
S2-18-all-fractions_k255_4590445 Species: R_OD1_Moranbacteria_54_31 (50%)	2	1521 bp	72.58	1.68	87.18
S2-18-all-fractions_k255_1563837 Species: Actinoplanes sp. N902-109 (50%)	2	1922 bp	70.76	5.78	54.63
S2-18-all-fractions_k255_2648291 Species: Actinoplanes missouriensis (100%)	2	2342 bp	68.87	5.32	96.46
S2-18-all-fractions_k255_2657542 Species: Actinoplanes friuliensis (100%)	2	2729 bp	72.92	7.04	99.60
S2-18-all-fractions_k255_2664993 Species: Actinoplanes friuliensis (50%)	2	2667 bp	77.35	2.47	82.23
S2-18-all-fractions_k255_4666532 Species: Actinoplanes utahensis (50%)	2	2563 bp	69.10	3.28	97.15
S2-18-all-fractions_k255_444370 Species: Actinoplanes friuliensis (100%)	2	1512 bp	71.76	2.78	95.04
S2-18-all-fractions_k255_1615485 Species: Actinoplanes friuliensis (50%)	2	1507 bp	73.32	1.99	96.75
S2-18-all-fractions_k255_445327 Species: Microbispora sp. ATCC PTA-5024 (50%)	2	2672 bp	66.62	0.90	85.33
S2-18-all-fractions_k255_4679160 Species: Stackebrandtia nassauensis (50%)	2	1869 bp	74.26	2.17	98.07
S2-18-all-fractions_k255_4679507 Species: Kitasatospora setae (50%)	2	2507 bp	73.51	1.14	100.64
S2-18-all-fractions_k255_496164 Species: Actinoplanes utahensis (50%)	2	1875 bp	75.84	1.68	96.96
S2-18-all-fractions_k255_502477 Species: Actinoplanes sp. N902-109 (50%)	2	1657 bp	72.06	4.62	85.46
S2-18-all-fractions_k255_505290 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	1640 bp	72.50	1.10	99.15
S2-18-all-fractions_k255_520961 Species: Actinoplanes sp. N902-109 (50%)	2	1832 bp	72.54	6.22	100.38
S2-18-all-fractions_k255_1670395 Species: Kibdelosporangium sp. MJ126-NF4 (50%)	2	2433 bp	73.61	4.32	99.14
S2-18-all-fractions_k255_555174 Species: Actinoplanes friuliensis (50%)	2	4640 bp	70.11	17.39	97.50
S2-18-all-fractions_k255_2752548 Species: Leifsonia rubra (50%)	2	1741 bp	70.53	2.41	26.36
S2-18-all-fractions_k255_560405 Species: Actinoplanes sp. N902-109 (50%)	2	2287 bp	74.11	3.15	94.97
S2-18-all-fractions_k255_1677227 Species: Micromonospora lupini (100%)	2	1723 bp	70.98	2.26	79.92
S2-18-all-fractions_k255_2764467 Species: Actinoplanes sp. N902-109 (50%)	2	1534 bp	70.99	4.79	100.13
S2-18-all-fractions_k255_1681330 Species: Actinoplanes utahensis (100%)	2	2373 bp	76.70	4.80	91.91
S2-18-all-fractions_k255_1723478 Species: Actinoplanes sp. SE50/110 (100%)	2	1526 bp	75.82	0.39	95.94
S2-18-all-fractions_k255_1728108 Species: RBG_16_Chloroflexi_48_8_curated (50%)	2	2423 bp	68.84	6.87	94.22
S2-18-all-fractions_k255_1739182 Species: Streptomyces leeuwenhoekii (50%)	2	2507 bp	72.84	2.33	88.79
S2-18-all-fractions_k255_4821979 Species: Actinoplanes friuliensis (100%)	2	1758 bp	72.64	4.10	98.63
S2-18-all-fractions_k255_605932 Species: Geodermatophilus obscurus (50%)	2	1963 bp	73.15	2.45	76.72
S2-18-all-fractions_k255_4865409 Species: Actinoplanes friuliensis (50%)	2	1873 bp	74.59	3.04	96.10
S2-18-all-fractions_k255_1776573 Species: Geodermatophilus obscurus (50%)	2	3001 bp	72.31	8.45	50.98
S2-18-all-fractions_k255_4875857 Species: Modestobacter multiseptatus (100%)	2	2735 bp	74.92	2.14	79.20
S2-18-all-fractions_k255_2863343 Species: Actinoplanes sp. N902-109 (50%)	2	2058 bp	72.93	5.83	95.92
S2-18-all-fractions_k255_2875264 Species: Actinoplanes friuliensis (100%)	2	1721 bp	73.16	1.22	100.06
S2-18-all-fractions_k255_672334 Species: Actinoplanes sp. N902-109 (50%)	2	1725 bp	67.94	7.22	100.17
S2-18-all-fractions_k255_680397 Species: Cellulomonas cellasea (50%)	2	2340 bp	72.61	3.91	101.15
S2-18-all-fractions_k255_4918530 Species: Actinoplanes missouriensis (50%)	2	1956 bp	68.46	4.37	61.50
S2-18-all-fractions_k255_1870399 Species: Verrucosispora maris (50%)	2	2210 bp	70.00	4.00	95.57
S2-18-all-fractions_k255_2894704 Species: Actinoplanes friuliensis (100%)	2	1993 bp	73.96	1.20	93.48
S2-18-all-fractions_k255_3754879 Species: Intrasporangium oryzae (100%)	2	2327 bp	71.68	2.77	96.56

Displaying items 1151-1200 of 1306 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (S2-18-all-fractions_metab_3) and add all its contigs / scaffolds to the organism you choose below

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S2-18-all-fractions_metab_3

wsip-metawrap-drep-bins_Actinoplanes_72_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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