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S3-16-all-fractions_k255_3549875_11

Organism: S3-16-all-fractions_metab_conc_49

partial RP 22 / 55 BSCG 22 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: 8725..12267

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.4
  • Coverage: 1179.0
  • Bit_score: 2201
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S934_GEOOG similarity UNIREF
DB: UNIREF100
  • Identity: 94.4
  • Coverage: 1179.0
  • Bit_score: 2201
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 94.3
  • Coverage: 1178.0
  • Bit_score: 2201
  • Evalue 0.0

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Taxonomy

Geodermatophilus obscurus → Geodermatophilus → Geodermatophilales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3543
GTGACCCTCCGCGGCGTGCTCGACGTCGTCCTCACCGACCCCGGGGTGGCCCGTGTCGTGGCCGCCGCCGGGAACGCGGAGCTGGCGGTCACCGCGCCGCCGTCCGTGCAGCCGCTGGTGGCCGCGGCGCTCGCGGCTCAGCGGGGCGGTGCCGGCGTGCCCGTCCTCGTCGTCACGGCGGGGGAGCGGGACGCCGACGCCGTCACCGACCAGCTGCGCTGCCTCCTGCACGACCGGCGCACCGAGGTCTTCCCCGCCTGGGAGACGCTGCCGCACGAGCGGCTCTCCCCGCGCGCGGACACCGTCGGCCGCCGGCTCGCGGTGCTGCGCGACCTGACCCACCCCGGCGCCAACGGGCCGGTCGACGTCCTGGTCGCGCCAGTGCGCAGCGTGCTGCAACCGCTGCCCCCCGGGCTGGGTGACCTGGTGCCGGTCGAGCTGCGGCCCGCGGACACCGTCGAGCTGGACGACGTCGCGCGTGCCCTGGCCGACGCCGCCTACACCCGCGTGGAGCTGGTGGAGAAGCGCGGCGAGTTCGCCGTCCGCGGTGGCCTGCTCGACGTCTTCCCGCCCACCGAGCCGCACCCGGTCCGGGTGGAGTTCTGGGGCGACGAGGTCGACGAGCTGCGCTACTTCTCCGCGGCCGACCAGCGCTCCCTCGACGAGCGCCCGGAGCGGCTGTGGGCCCCGCCGTGCCGCGAGCTGCTGCTCACCGACGAGGTGCGGGCCCGCGCGGCCGAGCTGGCGCGCCTGCACCCGGGCCTGCTCGACGTCCTCGGCAAGCTCGCCGAGGGCATCGCCGTCGAGGGCATGGAGTCGCTGACGCCCGCCCTCATCGAGGGCGACCTCCAGCTCCTCACCGACCTGGTGCCCGCCGGCACCCACGTGCTGGTGTGCGACCCCGAGCGGGTGCGCAGCCGCGCCGCGGACCTGGTGCGCACCGCCGAGGAGTTCCTCGCCGCATCGTGGGCGACCGCCGCCGAGGCCGGCGAGGCCCCGCTGGACCTGGGCGCCTCGTCGTTCCGGGACCTCGCCGACGTCGAGTCCGCCGCGCGCGGCCGCGGGCTGCCGTGGTGGAGCACCGGCGCCTTCACGCTGCAGAGCGAGGACGACGACACCCACGTCACCCTGGACGCGACGACGGTCGACCGCTTCGCCGGCGACGTCCCGCGCGCCGTCGAGCAGCTGCGCACCTGGTCCCGCGACGGCTGGCGGGTGGTGGTCACCTTCGCCGGTCCCGGCCCCGCGCAGCGCGCCGCCGACCAGTTCACCGAGGCCGACCTCGGCGCGCGGCTCGTGCCGGACATCGCGACGGCACCCGAGCCGCGGCTGACCCACGTCACCCAGGGCAGCCTGGAGGCCGGCTTCGCCTTCCCCGGCGTCGGCCTGGCGCTGCTCACCGAGCACGACCTCACCGGCCAGCGCGGCACGAGCATGCGCGACGCGGTGAAGATGCCCGCGCGCCGGCGCAACGCCGTCGACCTGGTCCAGCTGCAGCCAGGCGACCTCGTCGTCCACGAGCACCACGGCATCGGCCGCTACATCGAGATGGTCAGCCGCACCGTCAACGGCGGGCAGCGCGACTACCTCATCGTCGAGTACGCGCCCAGCAAGCGGAACCAGCCGCCGGACCGGCTGTTCGTGCCCACCGACGCCCTCGACCAGCTGACCCGCTACGTCGGCGGCGAGGCCCCGGCGCTGTCCAAGCTCGGCGGCGCGGACTGGCAGAAGACCAAGGGCCAGGCGCGCAAGGCGGTCAAGCAGATCGCCGCCGAGCTGATCCGGCTGTACTCGGCGCGGATGGCGACCACGGGCCACGCGTTCGGCCCGGACACCGTCTGGCAGCGCGAGCTCGAGGACGCCTTCCCGTTCCAGGAGACCCCCGACCAGCTCGCCGCGATCGACGAGGTCAAGGTCGACATGATGCACCCGGTCCCGATGGACCGGATCATCTGCGGCGACGTCGGCTACGGGAAGACCGAGATCGCGGTGCGGGCGGCCTTCAAGGCGGTGCAGGACGGCAAGCAGGTCGCCGTCCTGGTGCCGACGACGCTGCTGGCCAACCAGCACTTCAAGACCTTCTCCGAGCGTTTCGCACAGTTCCCCGTGACGGTGAAGGTGCTGTCCCGCTTCCAGTCCGACGCCGAGACGCGGCAGCTCCTGGCGCAGCTCGCCGACGGCACGATCGACGTGCTCGTCGGCACCCACCGGCTGCTGCAGCCCACCACCCGGTGGAAGGACCTGGGCCTGGTCATCGTCGACGAGGAGCAGCGCTTCGGCGTCGAGCACAAGGAGTACCTGAAGACCATGCGGACGGCGGTCGACGTCCTGTCGATGTCGGCCACCCCGATCCCGCGCACGCTGGAGATGTCGCTGACCGGCATCCGCGAGATGTCGACGATCCTCACCCCGCCCGAGGAGCGGCACCCGGTGCTGACCTACGTGGGCGCCTGGGACGACAAGCAGATGGCCGCCGCGATCCGCCGGGAGCTGCTGCGCGACGGCCAGGTCTTCGTGATCCACAACCGGGTGCAGTCGATCGACAAGGCCGCGGCGAAGATCCGCAACCTGGTGCCCGAGGCCCGGGTCGCGGTCGGCCACGGGCAGATGAAGGAGCACGAACTCGAGCGGATCATGGTCGGCTTCTGGGAGAAGGAGTACGACGTCCTGGTCGCGACGACGATCGTCGAGTCCGGCCTGGACATCCCGAACGCCAACACCCTGATCGTGGACCGGGCCGACACCTTCGGCCTCTCCCAGCTGCACCAGATCCGCGGGCGGGTCGGCCGCGGCCGGGAGCGGGCCTACGCCTACTTCACCTACGACCCCACGCGGCCGCTGACCGAGACCTCGGTCGACCGGCTGACCACCATCGCGCACAACACCGACCTCGGCGCCGGCATGGCAGTGGCCATGAAGGACCTGGAGATCCGCGGCTCGGGCAACCTGCTCGGCGGCGAGCAGTCCGGGCACATCGCCGGCGTCGGGTTCGACCTGTACGTGCGGCTGGTCGGCGAGGCGGTCACCGACTACCGGGCGCAGCTCAACGGGGAGGAGCCGCCGGCCGAGCCGGCCGACGTCCGGGTGGACCTGCCGGTCGACGCGCACCTGCCGCACGACTACGTGCCCGGCGAGCGGCTGCGGATGGAGGCCTACCGCAAGGTGGCCTCGGTGCAGTCCGACGAGCAGGCGCAGGCCGTGTTCGACGAGCTCACCGACCGCTACGGCACCCCGCCGGCGCCGGTGCTCAACCTGCTCGCCGTGGCGCGCTTCCGGGCCGCCGTCCGGCAGTGGGGGATCACCGAGGTGTCCCTGCAGGGCCGGGCGATCCGGATCTCACCGGTCCGGCTGCCGGAGTCCAAGCAGATGCGGCTGGCCCGGCTGGCCGACGGCGCGACCTACAAGTCCGCCGTCGACACCATCTCGCTCAAGGTGCCGGTCGGCCCCGACCGGCGCACGCCGCTGCGGGACGTCGCCCTGCTGGACCACCTGCACTCGCTGCTCGCCGCGCTGCTCGAGCAGCCGGTCGCGAAGGCCTCCTGA
PROTEIN sequence
Length: 1181
VTLRGVLDVVLTDPGVARVVAAAGNAELAVTAPPSVQPLVAAALAAQRGGAGVPVLVVTAGERDADAVTDQLRCLLHDRRTEVFPAWETLPHERLSPRADTVGRRLAVLRDLTHPGANGPVDVLVAPVRSVLQPLPPGLGDLVPVELRPADTVELDDVARALADAAYTRVELVEKRGEFAVRGGLLDVFPPTEPHPVRVEFWGDEVDELRYFSAADQRSLDERPERLWAPPCRELLLTDEVRARAAELARLHPGLLDVLGKLAEGIAVEGMESLTPALIEGDLQLLTDLVPAGTHVLVCDPERVRSRAADLVRTAEEFLAASWATAAEAGEAPLDLGASSFRDLADVESAARGRGLPWWSTGAFTLQSEDDDTHVTLDATTVDRFAGDVPRAVEQLRTWSRDGWRVVVTFAGPGPAQRAADQFTEADLGARLVPDIATAPEPRLTHVTQGSLEAGFAFPGVGLALLTEHDLTGQRGTSMRDAVKMPARRRNAVDLVQLQPGDLVVHEHHGIGRYIEMVSRTVNGGQRDYLIVEYAPSKRNQPPDRLFVPTDALDQLTRYVGGEAPALSKLGGADWQKTKGQARKAVKQIAAELIRLYSARMATTGHAFGPDTVWQRELEDAFPFQETPDQLAAIDEVKVDMMHPVPMDRIICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLANQHFKTFSERFAQFPVTVKVLSRFQSDAETRQLLAQLADGTIDVLVGTHRLLQPTTRWKDLGLVIVDEEQRFGVEHKEYLKTMRTAVDVLSMSATPIPRTLEMSLTGIREMSTILTPPEERHPVLTYVGAWDDKQMAAAIRRELLRDGQVFVIHNRVQSIDKAAAKIRNLVPEARVAVGHGQMKEHELERIMVGFWEKEYDVLVATTIVESGLDIPNANTLIVDRADTFGLSQLHQIRGRVGRGRERAYAYFTYDPTRPLTETSVDRLTTIAHNTDLGAGMAVAMKDLEIRGSGNLLGGEQSGHIAGVGFDLYVRLVGEAVTDYRAQLNGEEPPAEPADVRVDLPVDAHLPHDYVPGERLRMEAYRKVASVQSDEQAQAVFDELTDRYGTPPAPVLNLLAVARFRAAVRQWGITEVSLQGRAIRISPVRLPESKQMRLARLADGATYKSAVDTISLKVPVGPDRRTPLRDVALLDHLHSLLAALLEQPVAKAS*