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S3-18-all-fractions_k255_2614259

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S3-18-all-fractions_k255_2614259_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

3..1748
DNA (1746bp) protein (582aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] id=24446286 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pseudouridine synthase, RluA family
Tax=RBG_16_RIF_WS3X_71_46_curated
S3-18-all-fractions_k255_2614259_2
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(1763..2206)
DNA (444bp) protein (148aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GGV2_9CYAN
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EKQ66711.1}; TaxID=864702 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanobacterium JSC-12.;"
Hypothetical protein
S3-18-all-fractions_k255_2614259_3
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

2462..3346
DNA (885bp) protein (295aa)
PREDICTED: uncharacterized protein LOC101239953, partial n=1 Tax=unknown RepID=UPI0002B43470
Uncharacterized protein {ECO:0000313|EMBL:KIJ82877.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
hypothetical protein
S3-18-all-fractions_k255_2614259_4
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

3378..4286
DNA (909bp) protein (303aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa marina 5811 RepID=F9U5M8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KIJ82877.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
hypothetical protein
S3-18-all-fractions_k255_2614259_5
Amycolatopsis lurida, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4319..5662
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Amycolatopsis orientalis HCCB10007 RepID=R4TDP8_AMYOR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJK54547.1}; TaxID=1460371 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis lurida NRRL 2430.;"
S3-18-all-fractions_k255_2614259_6
unknown

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5665..6123
DNA (459bp) protein (153aa)

This feature has no annotations

S3-18-all-fractions_k255_2614259_7
Amycolatopsis lurida, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6139..8466
DNA (2328bp) protein (776aa)
Uncharacterized protein n=1 Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2X3Z1_9PSEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJK54545.1}; TaxID=1460371 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis lurida NRRL 2430.;"
S3-18-all-fractions_k255_2614259_8
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8481..9647
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237992B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFZ80616.1}; TaxID=1427749 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
S3-18-all-fractions_k255_2614259_9
unknown

Not on your lists

9665..10909
DNA (1245bp) protein (415aa)

This feature has no annotations

S3-18-all-fractions_k255_2614259_10
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

10934..12340
DNA (1407bp) protein (469aa)
beta-Ala-His dipeptidase (EC:3.4.13.20)
Peptidase M20 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDY0_THET1 id=5225588 bin=16ft_combo_ws3_JS1 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_Chloroflexi_57_9_curated
S3-18-all-fractions_k255_2614259_11
Synechococcus sp. PCC 7335, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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12709..13107
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNC3_9SYNE
Putative uncharacterized protein {ECO:0000313|EMBL:EDX85310.1}; TaxID=91464 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. PCC 7335.;"
transcriptional regulator
S3-18-all-fractions_k255_2614259_12
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13212..13610)
DNA (399bp) protein (133aa)
Transcriptional regulator, HxlR family n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2G9_THIK1
HxlR family transcriptional regulator
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ADG31302.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
S3-18-all-fractions_k255_2614259_13
R_NC10_66_22, NC10, Bacteria

Not on your lists

13729..14247
DNA (519bp) protein (173aa)
DinB family protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F8D4_ACIC5
DinB family protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
S3-18-all-fractions_k255_2614259_14
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14248..18324)
DNA (4077bp) protein (1359aa)
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI00037AD1CE
Uncharacterized protein {ECO:0000313|EMBL:AKF07045.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
S3-18-all-fractions_k255_2614259_15
Croceibacter atlanticus, Croceibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18415..18945)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090) RepID=A3U5L4_CROAH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAP87531.1}; TaxID=216432 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Croceibacter.;" source="Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090).;"
S3-18-all-fractions_k255_2614259_16
Corynebacterium urealyticum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19196..19882)
DNA (687bp) protein (229aa)
Cytidylate kinase n=2 Tax=Corynebacterium urealyticum RepID=B1VH06_CORU7
cmk; cytidylate kinase
GTPase Der {ECO:0000256|SAAS:SAAS00038180}; TaxID=504474 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109).;"
S3-18-all-fractions_k255_2614259_17
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(19879..20919)
DNA (1041bp) protein (347aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
ribosomal large subunit pseudouridine synthase B; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] id=12556003 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pseudouridine synthase rsuA family protein
S3-18-all-fractions_k255_2614259_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20916..21611)
DNA (696bp) protein (232aa)
scpB; segregation and condensation protein B; K06024 segregation and condensation protein B id=12556004 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
scpB; segregation and condensation protein B
Tax=RBG_16_Acidobacteria_70_10_curated
S3-18-all-fractions_k255_2614259_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(21608..22477)
DNA (870bp) protein (290aa)
Segregation and condensation protein A id=4127650 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Segregation and condensation protein A
Tax=RBG_16_Acidobacteria_70_10_curated
S3-18-all-fractions_k255_2614259_20
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(22474..23508)
DNA (1035bp) protein (345aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase id=2245858 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
S3-18-all-fractions_k255_2614259_21
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(23532..24227)
DNA (696bp) protein (232aa)
Peptidase M50 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXW6_9PROT
Zn-dependent protease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
S3-18-all-fractions_k255_2614259_22
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(24228..25190)
DNA (963bp) protein (321aa)
glycosyl transferase family protein (EC:2.4.1.-)
Putative glycosyltransferase (Family 2) {ECO:0000313|EMBL:CAJ35482.1}; EC=2.4.1.- {ECO:0000313|EMBL:CAJ35482.1};; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
Putative glycosyltransferase (Family 2) n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W811_UNCMA
S3-18-all-fractions_k255_2614259_23
RLO_PLX_64_10, Bacteria

Not on your lists

comp(25187..25708)
DNA (522bp) protein (174aa)
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
S3-18-all-fractions_k255_2614259_24
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25730..26878)
DNA (1149bp) protein (383aa)
Glycosyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7Y9_SINAD
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR61131.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
glycosyltransferase
S3-18-all-fractions_k255_2614259_25
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(26897..28954)
DNA (2058bp) protein (686aa)
ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] id=24429339 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
recG; ATP-dependent DNA helicase RecG
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
S3-18-all-fractions_k255_2614259_26
unknown

Not on your lists

29548..30258
DNA (711bp) protein (237aa)

This feature has no annotations

S3-18-all-fractions_k255_2614259_27
unknown

Not on your lists

30432..31259
DNA (828bp) protein (276aa)

This feature has no annotations

S3-18-all-fractions_k255_2614259_28
unknown

Not on your lists

comp(31329..32354)
DNA (1026bp) protein (342aa)

This feature has no annotations

Displaying 28 items

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