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04302015_12_scaffold_252

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Displaying items 1-30 of 50 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_252_1
unknown

Not on your lists

3..152
DNA (150bp) protein (50aa)

This feature has no annotations

04302015_12_scaffold_252_2
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125..979)
DNA (855bp) protein (285aa)
Acetyltransferase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z751_9SPHN rbh
Acetyltransferase {ECO:0000313|EMBL:EGD59557.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium ni
acetyltransferase rbh
04302015_12_scaffold_252_3
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(969..1403)
DNA (435bp) protein (145aa)
Ferric uptake regulator family protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z752_9SPHN
Ferric uptake regulator family protein {ECO:0000313|EMBL:EGD59558.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
ferric uptake regulator family protein; K03711 Fur family transcriptional regulator, ferric uptake regulator
04302015_12_scaffold_252_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1544..1987)
DNA (444bp) protein (148aa)
MucR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B34663
Transcriptional regulator {ECO:0000313|EMBL:GAO54671.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
MucR family transcriptional regulator
04302015_12_scaffold_252_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2639..3253)
DNA (615bp) protein (205aa)
Peptidase M22, glycoprotease n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z755_9SPHN
TsaB protein {ECO:0000313|EMBL:GAO54673.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD
peptidase M22, glycoprotease
04302015_12_scaffold_252_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3270..3848)
DNA (579bp) protein (193aa)
iron transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3147B rbh
NifU-like domain protein {ECO:0000313|EMBL:GAO54675.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphing
nitrogen-fixing NifU-like
04302015_12_scaffold_252_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3923..4231)
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QMP5_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:GAO54676.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
04302015_12_scaffold_252_8
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4380..4931
DNA (552bp) protein (184aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphap
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z757_9SPHN
FKBP-type peptidylprolyl isomerase
04302015_12_scaffold_252_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5029..7905
DNA (2877bp) protein (959aa)
peptidase M16-like protein; K07263 zinc protease [EC:3.4.24.-]
Peptidase M16-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9N8_NOVAD
Peptidase M16-like protein {ECO:0000313|EMBL:GAO54678.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphi
04302015_12_scaffold_252_10
Leptospira alstonii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

7984..8673
DNA (690bp) protein (230aa)
Putative lipoprotein n=2 Tax=Leptospira alstoni RepID=M6CU87_9LEPT
Putative lipoprotein {ECO:0000313|EMBL:EMJ95477.1}; TaxID=1218565 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira alstonii serovar Sichuan str. 79601.;
hypothetical protein
04302015_12_scaffold_252_11
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8764..10137
DNA (1374bp) protein (458aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] rbh
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase {ECO:0000313|EMBL:ABD25436.1}; EC=2.5.1.54 {ECO:0000313|EMBL:ABD25436.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphi
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9N7_NOVAD rbh
04302015_12_scaffold_252_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10246..12243
DNA (1998bp) protein (666aa)
UPI0003CFEB24 related cluster n=1 Tax=unknown RepID=UPI0003CFEB24 rbh
Prolyl oligopeptidase family protein {ECO:0000313|EMBL:GAO55084.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source
putative peptidase rbh
04302015_12_scaffold_252_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12299..13573
DNA (1275bp) protein (425aa)
Xaa-Pro dipeptidase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B61255 rbh
Amidohydrolase {ECO:0000313|EMBL:KHS44429.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subter
amidohydrolase rbh
04302015_12_scaffold_252_14
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13624..14652
DNA (1029bp) protein (343aa)
Oxidoreductase domain-containing protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IF03_9SPHN rbh
oxidoreductase domain-containing protein rbh
Oxidoreductase domain-containing protein {ECO:0000313|EMBL:CCA90878.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sou
04302015_12_scaffold_252_15
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14649..16121)
DNA (1473bp) protein (491aa)
beta-glycosidase; K01201 glucosylceramidase [EC:3.2.1.45] rbh
beta-glycosidase, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B31216 rbh
O-Glycosyl hydrolase {ECO:0000313|EMBL:KGB54481.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp.
04302015_12_scaffold_252_16
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16114..17619)
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PXB6_9ZZZZ rbh
Scaffold7, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31989.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
hypothetical protein rbh
04302015_12_scaffold_252_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17619..18665)
DNA (1047bp) protein (349aa)
Transcriptional regulator, LacI family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7K5_NOVAD rbh
LacI family transcription regulator; K02529 LacI family transcriptional regulator rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ABD26168.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
04302015_12_scaffold_252_18
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18974..21205
DNA (2232bp) protein (744aa)
TonB-dependent receptor n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEE8_9SPHN rbh
TonB-dependent receptor rbh
TonB-dependent receptor {ECO:0000313|EMBL:CCA90673.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
04302015_12_scaffold_252_19
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21300..23510
DNA (2211bp) protein (737aa)
Beta-glucosidase {ECO:0000313|EMBL:KHS46782.1}; EC=3.2.1.21 {ECO:0000313|EMBL:KHS46782.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Nov
beta-glucosidase (EC:3.2.1.21); K05349 beta-glucosidase [EC:3.2.1.21] rbh
beta-glucosidase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B36370 rbh
04302015_12_scaffold_252_20
unknown

Not on your lists

comp(23999..24136)
DNA (138bp) protein (46aa)

This feature has no annotations

04302015_12_scaffold_252_21
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24117..24818)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003769EDD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ61452.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
04302015_12_scaffold_252_22
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26420..27346)
DNA (927bp) protein (309aa)
DNA primase {ECO:0000313|EMBL:AKH41643.1}; EC=2.7.7.- {ECO:0000313|EMBL:AKH41643.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altere
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000364C492
P-loop ATPase-like protein
04302015_12_scaffold_252_23
unknown

Not on your lists

comp(27343..27543)
DNA (201bp) protein (67aa)

This feature has no annotations

04302015_12_scaffold_252_24
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27687..27875)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00036C8D17
Uncharacterized protein {ECO:0000313|EMBL:KEO90258.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter l
04302015_12_scaffold_252_25
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28902..29279)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LF34_BURGS
Uncharacterized protein {ECO:0000313|EMBL:AJZ63618.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungo
hypothetical protein
04302015_12_scaffold_252_26
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29567..30799)
DNA (1233bp) protein (411aa)
integrase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A3BE rbh
symbiosis island integrase
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
04302015_12_scaffold_252_trna_1
unknown

Not on your lists

comp(31001..31071)
DNA (71bp)
transferRNA
04302015_12_scaffold_252_27
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31150..31686)
DNA (537bp) protein (179aa)
adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00004}; Short=APRT {ECO:0000255|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000255|HAMAP-Rule:MF_00004};; TaxID=279238 species="Bacteria; Prote
Adenine phosphoribosyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=APT_NOVAD
04302015_12_scaffold_252_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31766..32578)
DNA (813bp) protein (271aa)
cytochrome C n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4B629 rbh
Cytochrome c1 {ECO:0000313|EMBL:EGD59875.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrog
cytochrome c1; K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit
04302015_12_scaffold_252_29
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32613..33905)
DNA (1293bp) protein (431aa)
Cytochrome b n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAJ9_NOVAD
cytochrome b/b6-like; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aroma
Displaying items 1-30 of 50 in total

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