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04302015_12_scaffold_545

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_545_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..163
DNA (162bp) protein (54aa)
ATP-dependent Clp protease ATP-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6C0BC
ATP dependent Clp protease; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
ATP dependent Clp protease {ECO:0000313|EMBL:ABD24515.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
04302015_12_scaffold_545_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(218..739)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VQF0_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO54291.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
04302015_12_scaffold_545_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

918..1886
DNA (969bp) protein (323aa)
Putative mRNA 3-end processing factor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCA7_NOVAD
mRNA 3-end processing factor {ECO:0000313|EMBL:GAO54292.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
mRNA 3-end processing factor; K07577 putative mRNA 3-end processing factor
04302015_12_scaffold_545_4
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1886..3487
DNA (1602bp) protein (534aa)
ATP-dependent DNA ligase {ECO:0000313|EMBL:KHS47873.1}; EC=6.5.1.1 {ECO:0000313|EMBL:KHS47873.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadace
ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1]
DNA ligase (ATP) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCA6_NOVAD
04302015_12_scaffold_545_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3503..3961
DNA (459bp) protein (153aa)
Globin n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5X0_9SPHN
Globin {ECO:0000313|EMBL:EGD60230.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifige
globin; K06886 hemoglobin
04302015_12_scaffold_545_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4003..4641
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5W9_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO54296.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
04302015_12_scaffold_545_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4619..4939)
DNA (321bp) protein (107aa)
UPF0235 protein Saro_0071 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCA3_NOVAD
UPF0235 protein NJ75_01666 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
hypothetical protein; K09131 hypothetical protein
04302015_12_scaffold_545_8
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4893..5447)
DNA (555bp) protein (185aa)
Transferase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z5W7_9SPHN rbh
Transferase {ECO:0000313|EMBL:EGD60227.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogen
transferase
04302015_12_scaffold_545_9
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5463..6008)
DNA (546bp) protein (182aa)
GCN5 family acetyltransferase n=1 Tax=Sphingomonas wittichii RepID=UPI0002DC4D04
GCN5 family acetyltransferase {ECO:0000313|EMBL:KHA64637.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
N-acetyltransferase GCN5
04302015_12_scaffold_545_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6005..7000)
DNA (996bp) protein (332aa)
delta-aminolevulinic acid dehydratase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24]
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadal
Delta-aminolevulinic acid dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCA1_NOVAD
04302015_12_scaffold_545_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7038..8624)
DNA (1587bp) protein (529aa)
membrane protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4F031 rbh
Membrane proteins related to metalloendopeptidases {ECO:0000313|EMBL:GAO54306.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingo
peptidase M23B
04302015_12_scaffold_545_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8701..9081)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N7P8_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:GAO54307.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
04302015_12_scaffold_545_13
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9181..10230
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W086_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJU13111.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein rbh
04302015_12_scaffold_545_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10306..12246)
DNA (1941bp) protein (647aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingo
membrane protease FtsH catalytic subunit (EC:3.4.24.-); K03798 cell division protease FtsH [EC:3.4.24.-]
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC98_NOVAD
04302015_12_scaffold_545_15
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12348..13253)
DNA (906bp) protein (302aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine
tRNA(Ile)-lysidine synthetase-like; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5W2_9SPHN rbh
04302015_12_scaffold_545_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13303..14241)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC96_NOVAD
TPR repeat containing exported protein {ECO:0000313|EMBL:GAO54313.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sour
hypothetical protein
04302015_12_scaffold_545_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14392..15198)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC95_NOVAD
Putative Xre family transcriptional regulator {ECO:0000313|EMBL:KHS47861.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;"
hypothetical protein
04302015_12_scaffold_545_18
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15503..17776)
DNA (2274bp) protein (758aa)
phosphoenolpyruvate-protein phosphotransferase PtsP; K08484 phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
PTSINtr with GAF domain, PtsP n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC94_NOVAD
PTSINtr with GAF domain, PtsP {ECO:0000313|EMBL:ABD24529.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
04302015_12_scaffold_545_19
unknown

Not on your lists

comp(17821..17934)
DNA (114bp) protein (38aa)

This feature has no annotations

04302015_12_scaffold_545_20
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17976..18134)
DNA (159bp) protein (53aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5V7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD60217.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
04302015_12_scaffold_545_21
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18376..18570
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B63D62
Uncharacterized protein {ECO:0000313|EMBL:EGD60215.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
04302015_12_scaffold_545_22
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18670..19200
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC91_NOVAD
hypothetical protein; K13592 regulator of CtrA degradation
Uncharacterized protein {ECO:0000313|EMBL:ABD24532.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
04302015_12_scaffold_545_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19250..20182
DNA (933bp) protein (311aa)
Beta-lactamase-like protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5V3_9SPHN rbh
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:GAO54320.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
beta-lactamase-like protein
04302015_12_scaffold_545_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20164..20820
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC87_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54321.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
04302015_12_scaffold_545_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20907..21080
DNA (174bp) protein (58aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphing
quinolinate synthetase; K03517 quinolinate synthase [EC:2.5.1.72]
Quinolinate synthase A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC85_NOVAD
Displaying 25 items

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