ggKbase home page

04302015_12_scaffold_1006

Search features with annotation key words

Displaying 27 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_1006_1
unknown

Not on your lists

comp(1..60)
DNA (60bp) protein (20aa)

This feature has no annotations

04302015_12_scaffold_1006_2
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(195..1478)
DNA (1284bp) protein (428aa)
C4-dicarboxylate ABC transporter permease n=2 Tax=Bacillus RepID=U5LI38_9BACI rbh
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KJS19693.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_
C4-dicarboxylate ABC transporter permease
04302015_12_scaffold_1006_3
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1505..2020)
DNA (516bp) protein (172aa)
Putative transporter n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2KYI6_9PROT
TRAP-type C4-dicarboxylate transport system, small permease component {ECO:0000313|EMBL:BAO82377.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
TRAP-type C4-dicarboxylate transport system, small permease component
04302015_12_scaffold_1006_4
bacterium YEK0313, Bacteria

Not on your lists

comp(2085..3080)
DNA (996bp) protein (332aa)
C4-dicarboxylate ABC transporter n=1 Tax=Brevibacillus panacihumi W25 RepID=V6LZD7_9BACL
Sialic acid-binding periplasmic protein SiaP {ECO:0000313|EMBL:CEJ10147.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TRAP dicarboxylate transporter, DctP subunit
04302015_12_scaffold_1006_5
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3156..4496)
DNA (1341bp) protein (447aa)
Putative homoserine dehydrogenase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2VXX5_9BRAD rbh
Putative homoserine dehydrogenase {ECO:0000313|EMBL:EJN11127.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrh
oxidoreductase domain-containing protein
04302015_12_scaffold_1006_6
bacterium YEK0313, Bacteria

Not on your lists

4745..5659
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AWT6_AZOBR
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:CEJ10149.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
transcriptional regulator, LysR family
04302015_12_scaffold_1006_7
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5709..7163)
DNA (1455bp) protein (485aa)
UPF0061 protein MmSR116_2450 n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y6E8_9RHIZ rbh
UPF0061 protein MmSR116_2450 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methy
hypothetical protein
04302015_12_scaffold_1006_8
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7285..9807
DNA (2523bp) protein (841aa)
N-acetyltransferase GCN5 n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Z0C3_9RHIZ
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EMS42054.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacter
N-acetyltransferase GCN5; K09181 hypothetical protein
04302015_12_scaffold_1006_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10135..10602
DNA (468bp) protein (156aa)
(2Fe-2S)-binding domain-containing protein; K07302 isoquinoline 1-oxidoreductase, alpha subunit [EC:1.3.99.16]
(2Fe-2S)-binding domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZD9_STAND
Isoquinoline 1-oxidoreductase, alpha subunit {ECO:0000313|EMBL:KFC63582.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea
04302015_12_scaffold_1006_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10702..12909
DNA (2208bp) protein (736aa)
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; K07303 isoquinoline 1-oxidoreductase, beta subunit [EC:1.3.99.16] rbh
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Polaromonas sp. CF318 RepID=J2LZH0_9BURK rbh
Isoquinoline 1-oxidoreductase, beta subunit {ECO:0000313|EMBL:KFC63581.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea
04302015_12_scaffold_1006_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13085..13531
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000345BA70
Putative cytochrome c, putative soxX protein {ECO:0000313|EMBL:KFC63580.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea
cytochrome c class I
04302015_12_scaffold_1006_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13494..13988
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F3E311
Putative sulfur oxidation protein soxY {ECO:0000313|EMBL:KFC63579.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. L
sulfur oxidation protein SoxY
04302015_12_scaffold_1006_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14000..14323
DNA (324bp) protein (108aa)
Sulfur oxidation protein SoxZ n=1 Tax=Oceanibaculum indicum P24 RepID=K2KNA9_9PROT
Sulfur oxidation protein SoxZ {ECO:0000313|EMBL:KFC63578.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sulfur oxidation protein SoxZ
04302015_12_scaffold_1006_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14482..15237
DNA (756bp) protein (252aa)
SoxAX cytochrome complex subunit A {ECO:0000313|EMBL:KFC63577.1}; EC=1.8.2.- {ECO:0000313|EMBL:KFC63577.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhi
SoxAX cytochrome complex subunit A n=1 Tax=Oceanibaculum indicum P24 RepID=K2K7Y8_9PROT
putative sulfur oxidation diheme cytochrome SoxA
04302015_12_scaffold_1006_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15277..16752)
DNA (1476bp) protein (492aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002ED882D rbh
Putative phosphonoacetate hydrolase {ECO:0000313|EMBL:KFC70490.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85
type I phosphodiesterase/nucleotide pyrophosphatase
04302015_12_scaffold_1006_16
unknown

Not on your lists

comp(16919..17179)
DNA (261bp) protein (87aa)

This feature has no annotations

04302015_12_scaffold_1006_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17392..17973
DNA (582bp) protein (194aa)
Putative cystathionine beta-lyase (CBL Beta-cystathionase Cysteine lyase) {ECO:0000313|EMBL:KFC69331.1}; EC=4.4.1.8 {ECO:0000313|EMBL:KFC69331.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alp
cystathionine beta-lyase (EC:4.4.1.8); K01760 cystathionine beta-lyase [EC:4.4.1.8]
Putative cystathionine beta-lyase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RTP6_9PROT
04302015_12_scaffold_1006_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18001..18156
DNA (156bp) protein (52aa)
Putative cystathionine beta-lyase (CBL Beta-cystathionase Cysteine lyase) {ECO:0000313|EMBL:KFC69331.1}; EC=4.4.1.8 {ECO:0000313|EMBL:KFC69331.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alp
Putative cystathionine beta-lyase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RTP6_9PROT
04302015_12_scaffold_1006_19
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18179..18934)
DNA (756bp) protein (252aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D7FC04 rbh
Putative uncharacterized protein {ECO:0000313|EMBL:CBA32320.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter
04302015_12_scaffold_1006_20
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18931..19971)
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003105127 rbh
Putative uncharacterized protein {ECO:0000313|EMBL:CBA32322.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter
fecD; Fe(III) dicitrate ABC transporter permease; K02015 iron complex transport system permease protein rbh
04302015_12_scaffold_1006_21
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19968..21083)
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FD510B rbh
Putative uncharacterized protein {ECO:0000313|EMBL:CBA32324.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter
ABC transporter substrate binding protein (iron) rbh
04302015_12_scaffold_1006_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21125..21598)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ICD3_XANP2
Uncharacterized protein {ECO:0000313|EMBL:KFC72860.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K09796 hypothetical protein
04302015_12_scaffold_1006_23
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21632..23077)
DNA (1446bp) protein (482aa)
UPI0003CF816A related cluster n=1 Tax=unknown RepID=UPI0003CF816A rbh
Copper resistance protein C {ECO:0000313|EMBL:ESY77734.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium
copper resistance protein CopC; K14166 copper transport protein
04302015_12_scaffold_1006_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23171..23689)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A3Y3_RHIFH
Uncharacterized protein {ECO:0000313|EMBL:KFC68457.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
04302015_12_scaffold_1006_25
unknown

Not on your lists

comp(23772..23960)
DNA (189bp) protein (63aa)

This feature has no annotations

04302015_12_scaffold_1006_26
unknown

Not on your lists

comp(24063..24482)
DNA (420bp) protein (140aa)

This feature has no annotations

04302015_12_scaffold_1006_27
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24630..25631
DNA (1002bp) protein (334aa)
Cobalamin synthesis protein P47K n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZDR8_METPB
cobalamin synthesis protein P47K
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:ACB80984.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methy
Displaying 27 items

View Taxonomy