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04302015_12_scaffold_536

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Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_536_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..329
DNA (327bp) protein (109aa)
Transcription termination factor NusA n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZH9_STAND
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;"
transcription termination factor NusA; K02600 N utilization substance protein A
04302015_12_scaffold_536_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

344..1117
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003811911
Uncharacterized protein {ECO:0000313|EMBL:KFC65466.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K07742 hypothetical protein
04302015_12_scaffold_536_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1114..1440
DNA (327bp) protein (109aa)
translation initiation factor IF-2 n=1 Tax=Methylobacterium sp. 77 RepID=UPI00036DA0B4
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiacea
translation initiation factor IF-2; K02519 translation initiation factor IF-2
04302015_12_scaffold_536_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1430..3844
DNA (2415bp) protein (805aa)
Translation initiation factor IF-2 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ31_9RHIZ rbh
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiacea
translation initiation factor IF-2; K02519 translation initiation factor IF-2
04302015_12_scaffold_536_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3943..4371
DNA (429bp) protein (143aa)
ribosome-binding factor A n=1 Tax=Methylobacterium sp. 88A RepID=UPI00036ABF41
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
04302015_12_scaffold_536_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4364..5311
DNA (948bp) protein (316aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] rbh
tRNA pseudouridine synthase B n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CQK7_9RHIZ rbh
04302015_12_scaffold_536_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5703..5972
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036DDAAD
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
04302015_12_scaffold_536_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6239..8407
DNA (2169bp) protein (723aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=150285
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ36_9RHIZ rbh
04302015_12_scaffold_536_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8605..9240
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJN0_AFIFE rbh
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein {ECO:0000313|EMBL:KFC65478.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea
hypothetical protein
04302015_12_scaffold_536_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9415..10413)
DNA (999bp) protein (333aa)
Putative pfkB family carbohydrate kinase Adenosine kinase {ECO:0000313|EMBL:KFC65479.1}; EC=2.7.1.20 {ECO:0000313|EMBL:KFC65479.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteri
PfkB protein (EC:2.7.1.20)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EB8B72 rbh
04302015_12_scaffold_536_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10503..10889)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D90990
Anaerobic benzoate catabolism transcriptional regulator {ECO:0000313|EMBL:KFC65480.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" so
XRE family transcriptional regulator
04302015_12_scaffold_536_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10886..11449)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E401EE
Smr protein/MutS2 {ECO:0000313|EMBL:KFC65481.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Smr protein/MutS2
04302015_12_scaffold_536_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11452..12630)
DNA (1179bp) protein (393aa)
MltA domain-containing protein; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-]
Membrane-bound lytic murein transglycosylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ13_9RHIZ rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:KFC65482.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
04302015_12_scaffold_536_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12627..13355)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ12_9RHIZ
Transporter {ECO:0000313|EMBL:KFC65483.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
import inner membrane translocase subunit Tim44
04302015_12_scaffold_536_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13600..14091
DNA (492bp) protein (164aa)
Protein-export protein SecB n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZHA5_METPB
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
protein-export protein SecB; K03071 preprotein translocase subunit SecB
04302015_12_scaffold_536_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14265..15008
DNA (744bp) protein (248aa)
Putative membrane protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IE92_AZOC5
Integral membrane protein TerC {ECO:0000313|EMBL:KFC65485.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
terC; hypothetical protein
04302015_12_scaffold_536_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15017..15724)
DNA (708bp) protein (236aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FC64C6 rbh
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:KFC65486.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85
04302015_12_scaffold_536_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15717..16343)
DNA (627bp) protein (209aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1502851 species="Bacteria; P
dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24]
Dephospho-CoA kinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ09_9RHIZ
04302015_12_scaffold_536_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16387..17736)
DNA (1350bp) protein (450aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25] rbh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031F6A4B
04302015_12_scaffold_536_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17733..18563)
DNA (831bp) protein (277aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00
PEP synthetase regulatory protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031EB01A rbh
hypothetical protein; K09773 hypothetical protein rbh
04302015_12_scaffold_536_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19019..20059
DNA (1041bp) protein (347aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.
hemE; uroporphyrinogen decarboxylase; K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
Uroporphyrinogen decarboxylase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S0X1_9BRAD rbh
04302015_12_scaffold_536_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20090..20512
DNA (423bp) protein (141aa)
UPI0003D0271F related cluster n=1 Tax=unknown RepID=UPI0003D0271F
Uncharacterized protein {ECO:0000313|EMBL:KFC65492.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
integral membrane protein, involvement in cytochrome functioning/assembly; K08973 putative membrane protein
04302015_12_scaffold_536_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20731..21996
DNA (1266bp) protein (422aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1502851 speci
transcription termination factor Rho n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000306F253
transcription termination factor Rho; K03628 transcription termination factor Rho
04302015_12_scaffold_536_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22048..23361
DNA (1314bp) protein (438aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brady
trmE; tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D58E2C rbh
04302015_12_scaffold_536_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23424..25310
DNA (1887bp) protein (629aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=MNMG_AZOC5
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1502851 species="Bacte
tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme
04302015_12_scaffold_536_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25333..25980
DNA (648bp) protein (216aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltran
methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYZ8_9RHIZ
04302015_12_scaffold_536_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25977..26807
DNA (831bp) protein (277aa)
chromosome partitioning protein ParA n=1 Tax=Methylopila sp. M107 RepID=UPI00035D7653 rbh
Chromosome segregation ATPase {ECO:0000313|EMBL:KFC65498.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
parA; chromosome partitioning protein; K03496 chromosome partitioning protein
04302015_12_scaffold_536_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26828..27712
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E98A90 rbh
ParB-like partition protein {ECO:0000313|EMBL:KFC65499.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
parB-like partition protein; K03497 chromosome partitioning protein, ParB family rbh
04302015_12_scaffold_536_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27717..28010)
DNA (294bp) protein (98aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III, delta subunit {ECO:0000313|EMBL:KFC65500.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;
04302015_12_scaffold_536_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27971..28609)
DNA (639bp) protein (213aa)
putative DNA polymerase III, delta subunit; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III, delta subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYZ5_9RHIZ
DNA polymerase III, delta subunit {ECO:0000313|EMBL:KFC65500.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;
Displaying items 1-30 of 39 in total

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